Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZO16_RS08440 Genome accession   NZ_CP080075
Coordinates   1784298..1785725 (-) Length   475 a.a.
NCBI ID   WP_223419650.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ663Rt     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779298..1790725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO16_RS08405 (KZO16_08425) hisL 1779882..1779932 (-) 51 WP_001364200.1 his operon leader peptide -
  KZO16_RS08410 (KZO16_08430) yefM 1780215..1780466 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  KZO16_RS08415 (KZO16_08435) yoeB 1780463..1780717 (+) 255 WP_001471733.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  KZO16_RS08420 (KZO16_08440) yeeZ 1780800..1781624 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KZO16_RS08425 (KZO16_08445) yeeY 1781670..1782599 (+) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  KZO16_RS08430 (KZO16_08450) yoeI 1782814..1782876 (+) 63 WP_010723108.1 membrane protein YoeI -
  KZO16_RS08435 (KZO16_08455) plaP 1782866..1784224 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KZO16_RS08440 (KZO16_08460) sbcB 1784298..1785725 (-) 1428 WP_223419650.1 exodeoxyribonuclease I Machinery gene
  KZO16_RS08445 (KZO16_08465) dacD 1785934..1787100 (+) 1167 WP_001374019.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZO16_RS08450 (KZO16_08470) sbmC 1787219..1787692 (+) 474 WP_001471730.1 DNA gyrase inhibitor SbmC -
  KZO16_RS08455 (KZO16_08475) - 1787890..1788441 (+) 552 Protein_1658 FUSC family protein -
  KZO16_RS08460 (KZO16_08480) - 1788634..1789614 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  KZO16_RS08465 (KZO16_08485) - 1789709..1790227 (+) 519 Protein_1660 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54478.77 Da        Isoelectric Point: 5.4589

>NTDB_id=516779 KZO16_RS08440 WP_223419650.1 1784298..1785725(-) (sbcB) [Escherichia coli strain 19SZHZ663Rt]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQHWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=516779 KZO16_RS08440 WP_223419650.1 1784298..1785725(-) (sbcB) [Escherichia coli strain 19SZHZ663Rt]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACACTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579