Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KZO16_RS02045 Genome accession   NZ_CP080075
Coordinates   443869..444336 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ663Rt     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438869..449336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO16_RS02020 (KZO16_02020) rpsG 439010..439480 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  KZO16_RS02025 (KZO16_02025) fusA 439577..441691 (+) 2115 WP_000124700.1 elongation factor G -
  KZO16_RS02030 (KZO16_02030) tuf 441762..442946 (+) 1185 WP_000031783.1 elongation factor Tu -
  KZO16_RS02035 (KZO16_02035) bfd 443129..443323 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KZO16_RS02040 (KZO16_02040) bfr 443396..443872 (+) 477 WP_000675515.1 bacterioferritin -
  KZO16_RS02045 (KZO16_02045) pilD 443869..444336 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  KZO16_RS02050 (KZO16_02050) rpsJ 444715..445026 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  KZO16_RS02055 (KZO16_02055) rplC 445059..445688 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  KZO16_RS02060 (KZO16_02060) rplD 445699..446304 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  KZO16_RS02065 (KZO16_02065) rplW 446301..446603 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  KZO16_RS02070 (KZO16_02070) rplB 446621..447442 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  KZO16_RS02075 (KZO16_02075) rpsS 447459..447737 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  KZO16_RS02080 (KZO16_02080) rplV 447752..448084 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  KZO16_RS02085 (KZO16_02085) rpsC 448102..448803 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  KZO16_RS02090 (KZO16_02090) rplP 448816..449226 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=516758 KZO16_RS02045 WP_000340171.1 443869..444336(-) (pilD) [Escherichia coli strain 19SZHZ663Rt]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=516758 KZO16_RS02045 WP_000340171.1 443869..444336(-) (pilD) [Escherichia coli strain 19SZHZ663Rt]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361