Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I31_RS05380 Genome accession   NZ_CP066042
Coordinates   1104517..1105884 (+) Length   455 a.a.
NCBI ID   WP_115313969.1    Uniprot ID   A0A380HC52
Organism   Staphylococcus saccharolyticus strain FDAARGOS_1074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099517..1110884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I31_RS05360 (I6I31_05360) - 1099772..1100233 (+) 462 WP_115313973.1 CtsR family transcriptional regulator -
  I6I31_RS05365 (I6I31_05365) - 1100254..1100817 (+) 564 WP_115313972.1 UvrB/UvrC motif-containing protein -
  I6I31_RS05370 (I6I31_05370) - 1100810..1101814 (+) 1005 WP_115313971.1 protein arginine kinase -
  I6I31_RS05375 (I6I31_05375) - 1101830..1104283 (+) 2454 WP_115313970.1 ATP-dependent Clp protease ATP-binding subunit -
  I6I31_RS05380 (I6I31_05380) radA 1104517..1105884 (+) 1368 WP_115313969.1 DNA repair protein RadA Machinery gene
  I6I31_RS05385 (I6I31_05385) - 1105937..1107019 (+) 1083 WP_115313968.1 PIN/TRAM domain-containing protein -
  I6I31_RS05390 (I6I31_05390) gltX 1107414..1108868 (+) 1455 WP_115313967.1 glutamate--tRNA ligase -
  I6I31_RS05395 (I6I31_05395) cysE 1109277..1109906 (+) 630 WP_185802520.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50126.76 Da        Isoelectric Point: 7.2804

>NTDB_id=516697 I6I31_RS05380 WP_115313969.1 1104517..1105884(+) (radA) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
MAKKKVIFECMACGYQSPKWMGKCPSCGAWNQMEETIEKATNPKHDVKSKEVVGKVQKLNSIKHEVIPRILTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICATLSQNKNVLYISGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
DERPDLLVIDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDRTVDGLDCFVGEVGLTGEVR
RISRIEQRVQEAAKLGFKRAIIPKTNIGGWTFPEGIQVIGVSTVHEALKFALHST

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=516697 I6I31_RS05380 WP_115313969.1 1104517..1105884(+) (radA) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
ATGGCCAAGAAAAAAGTAATATTTGAATGTATGGCATGTGGCTATCAATCTCCGAAATGGATGGGTAAATGCCCAAGTTG
TGGTGCATGGAATCAAATGGAAGAAACGATAGAGAAGGCTACCAACCCTAAGCATGATGTAAAGTCAAAGGAAGTAGTAG
GAAAAGTTCAAAAGCTTAATAGTATTAAACATGAAGTCATACCGAGAATTCTTACTGATTCAAAAGAATTTAATAGAGTA
CTTGGTGGTGGAATCGTTAGTGGGTCGCTTGTACTTATAGGTGGAGATCCAGGTATAGGAAAGTCTACACTACTTCTTCA
AATATGTGCTACACTATCGCAAAATAAAAATGTGCTATATATCAGTGGTGAGGAATCGATTAATCAAACTAAACTACGCG
CAGATCGCTTAGAAGAAGATTCTAGTCACCTAAATGTATTAGCTGAAACTGATTTAGAGGTCATTCATCAAACCGTTAAA
GATGAACGTCCTGATTTGCTTGTCATAGACTCTATACAAACGATTTATCATCCGGAAATCAGTTCTGCGCCTGGTTCAGT
ATCTCAGGTTAGGGAAAGCACACAAAGTTTAATGAATATAGCGAAGCAGATGAATATTGCTACCTTTATAGTTGGTCATG
TTACGAAAGAAGGCCAAATAGCTGGGCCTAGATTACTTGAGCATATGGTAGATACAGTACTATATTTCGAAGGTGATGAG
CATCATGCTTATCGTATCTTGAGAGCCGTTAAAAACCGTTTTGGATCTACAAATGAGATGGGGATTTTTGAAATGAAACA
AAGTGGATTAAAAGGTGTTCTTAATCCATCTGAAATGTTCTTAGAGGAACGTTCAACTAATGTTCCTGGTTCGACAATTG
TTCCTACTATGGAAGGAACACGACCACTTCTTATCGAAGTTCAAGCATTAGTTACTCCTACAACATTTAATAATCCTAGA
CGTATGGCTACTGGTATAGATCACAATAGATTAAGTCTCCTGATGGCTGTATTAGAAAAGAAAGAAAATTATTTACTGCA
ACAACAAGACGCTTATATTAAAGTTGCAGGTGGTGTGAAATTAACAGAACCGGCTGTAGACCTTAGCATTATTGTAGCTA
CTGCATCAAGCTTCAAAGACAGAACTGTAGACGGCTTAGACTGTTTTGTAGGTGAAGTAGGTTTGACTGGGGAAGTTCGT
CGAATATCGCGTATAGAACAACGTGTTCAAGAAGCAGCAAAACTTGGTTTTAAAAGAGCTATCATTCCTAAAACTAATAT
AGGAGGTTGGACTTTTCCTGAAGGTATACAGGTAATTGGTGTATCTACAGTTCATGAAGCTTTGAAATTCGCACTTCACT
CGACATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HC52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.886

100

0.67
  radA Streptococcus pneumoniae Rx1

61.024

98.681

0.602
  radA Streptococcus pneumoniae D39

61.024

98.681

0.602
  radA Streptococcus pneumoniae R6

61.024

98.681

0.602
  radA Streptococcus pneumoniae TIGR4

61.024

98.681

0.602
  radA Streptococcus mitis NCTC 12261

61.024

98.681

0.602
  radA Streptococcus mitis SK321

61.024

98.681

0.602