Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KZO15_RS02150 Genome accession   NZ_CP080070
Coordinates   467379..468056 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ713Rt     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462379..473056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO15_RS02135 (KZO15_02125) chiA 463746..466439 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  KZO15_RS02140 (KZO15_02130) bfd 466608..466802 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  KZO15_RS02145 (KZO15_02135) bfr 466874..467350 (+) 477 WP_000675504.1 bacterioferritin -
  KZO15_RS02150 (KZO15_02140) pilD 467379..468056 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  KZO15_RS02155 (KZO15_02145) gspM 468056..468517 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  KZO15_RS02160 (KZO15_02150) gspL 468514..469677 (-) 1164 WP_157700682.1 type II secretion system protein GspL -
  KZO15_RS02165 (KZO15_02155) gspK 469692..470675 (-) 984 Protein_431 type II secretion system minor pseudopilin GspK -
  KZO15_RS02170 (KZO15_02160) gspJ 470668..471255 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  KZO15_RS02175 (KZO15_02165) gspI 471248..471625 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  KZO15_RS02180 (KZO15_02170) gspH 471622..472131 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  KZO15_RS02185 (KZO15_02175) gspG 472139..472576 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=516677 KZO15_RS02150 WP_000178161.1 467379..468056(-) (pilD) [Escherichia coli strain 19SZHZ713Rt]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=516677 KZO15_RS02150 WP_000178161.1 467379..468056(-) (pilD) [Escherichia coli strain 19SZHZ713Rt]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378