Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6I32_RS06965 Genome accession   NZ_CP066041
Coordinates   1447685..1448398 (-) Length   237 a.a.
NCBI ID   WP_198464375.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1437423..1456284 1447685..1448398 within 0


Gene organization within MGE regions


Location: 1437423..1456284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS06935 (I6I32_06935) - 1437423..1437617 (-) 195 WP_001082470.1 helix-turn-helix transcriptional regulator -
  I6I32_RS06940 (I6I32_06940) rsmH 1437780..1438730 (+) 951 WP_000159388.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  I6I32_RS06945 (I6I32_06945) ftsL 1438741..1439058 (+) 318 WP_000840795.1 cell division protein FtsL -
  I6I32_RS06950 (I6I32_06950) pbp2X 1439062..1441317 (+) 2256 WP_198464372.1 penicillin-binding protein PBP2X -
  I6I32_RS06955 (I6I32_06955) mraY 1441319..1442299 (+) 981 WP_198464373.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  I6I32_RS06960 (I6I32_06960) - 1442369..1447432 (-) 5064 WP_198464374.1 SIALI-17 repeat-containing surface protein -
  I6I32_RS06965 (I6I32_06965) treR 1447685..1448398 (-) 714 WP_198464375.1 trehalose operon repressor Regulator
  I6I32_RS06970 (I6I32_06970) treP 1448583..1450550 (+) 1968 WP_198464376.1 PTS system trehalose-specific EIIBC component -
  I6I32_RS06975 (I6I32_06975) treC 1450614..1452239 (+) 1626 WP_001162367.1 alpha,alpha-phosphotrehalase -
  I6I32_RS06980 (I6I32_06980) - 1452385..1452630 (+) 246 WP_125399316.1 YneF family protein -
  I6I32_RS06985 (I6I32_06985) racE 1452836..1453630 (+) 795 WP_198464377.1 glutamate racemase -
  I6I32_RS06990 (I6I32_06990) - 1453627..1454598 (+) 972 WP_000182431.1 nucleoside-triphosphate diphosphatase -
  I6I32_RS06995 (I6I32_06995) - 1454574..1455095 (+) 522 WP_001118939.1 metallophosphoesterase -
  I6I32_RS07000 (I6I32_07000) cbpB 1455092..1455553 (+) 462 WP_000560697.1 cyclic-di-AMP-binding protein CbpB -
  I6I32_RS07005 (I6I32_07005) xerD 1455550..1456284 (+) 735 WP_332836301.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27775.85 Da        Isoelectric Point: 7.5109

>NTDB_id=516676 I6I32_RS06965 WP_198464375.1 1447685..1448398(-) (treR) [Streptococcus oralis strain FDAARGOS_1075]
MKKYQQLFKQIQKTIQNETYAIGDFLPSEHDLMNQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELVPNLTRQIAEQSIY
SYIEDDLKLHIDYAQKEITIDHTSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=516676 I6I32_RS06965 WP_198464375.1 1447685..1448398(-) (treR) [Streptococcus oralis strain FDAARGOS_1075]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAAAAACCATTCAAAACGAGACTTACGCTATCGGAGATTTCCTCCC
TAGTGAACACGACCTCATGAATCAGTATCAGGTGAGCCGTGACACCGTCCGAAAAGCTCTGTCCCTCCTCCAAGAGGAAG
GATTAATCAAAAAGATAAGGGGGCAAGGTTCCCAAGTCGTCAAAGAAGAAACGGTCAATTTCCCTGTCTCCAACCTAACC
AGCTACCAAGAACTGGTCCAGGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTAGATAAAATCATTATCGATAA
AAAGTCCTCACTGATAACCGGCTTTCCAGAGTTTCGGATGGTGTGGAAGGTAGTCCGCCAGCGTGTAGTGGATGATCTAG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTGGTCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAC
TCGTATATAGAGGACGACCTCAAACTCCATATTGATTATGCTCAGAAAGAAATTACCATTGACCACACAAGTGATCGAGA
CAAGATTCTCATGGATATTGGCAAAGACCCTTATGTCGTTTCAATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAATTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGACATCCGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.872

99.156

0.574