Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I32_RS05295 Genome accession   NZ_CP066041
Coordinates   1079298..1080662 (-) Length   454 a.a.
NCBI ID   WP_185756299.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074298..1085662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS05270 (I6I32_05270) - 1074632..1075801 (-) 1170 WP_198464221.1 pyridoxal phosphate-dependent aminotransferase -
  I6I32_RS05275 (I6I32_05275) - 1075953..1076963 (+) 1011 WP_198464222.1 YeiH family protein -
  I6I32_RS05280 (I6I32_05280) - 1076990..1077427 (-) 438 WP_198464223.1 CoA-binding protein -
  I6I32_RS05285 (I6I32_05285) - 1077548..1078516 (-) 969 WP_000010175.1 ribose-phosphate diphosphokinase -
  I6I32_RS05290 (I6I32_05290) - 1078731..1079225 (-) 495 WP_025170864.1 beta-class carbonic anhydrase -
  I6I32_RS05295 (I6I32_05295) radA 1079298..1080662 (-) 1365 WP_185756299.1 DNA repair protein RadA Machinery gene
  I6I32_RS05300 (I6I32_05300) - 1080702..1081190 (-) 489 WP_198464224.1 hypothetical protein -
  I6I32_RS05305 (I6I32_05305) - 1081207..1081746 (-) 540 WP_198464225.1 histidine phosphatase family protein -
  I6I32_RS05310 (I6I32_05310) - 1081748..1082191 (-) 444 WP_000701981.1 dUTP diphosphatase -
  I6I32_RS05320 (I6I32_05320) tadA 1082382..1082849 (-) 468 WP_198464226.1 tRNA adenosine(34) deaminase TadA -
  I6I32_RS05325 (I6I32_05325) - 1083050..1084336 (-) 1287 WP_061428590.1 adenylosuccinate synthase -
  I6I32_RS09595 comW 1084578..1084814 (-) 237 WP_084880024.1 sigma(X)-activator ComW -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49547.05 Da        Isoelectric Point: 6.1894

>NTDB_id=516657 I6I32_RS05295 WP_185756299.1 1079298..1080662(-) (radA) [Streptococcus oralis strain FDAARGOS_1075]
MIAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=516657 I6I32_RS05295 WP_185756299.1 1079298..1080662(-) (radA) [Streptococcus oralis strain FDAARGOS_1075]
ATCATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGTCCTAA
CTGTGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGA
AAACCAAGCCCATGAAACTGGCTGAGGTGACTTCAATCAACGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGT
GTGCTTGGTGGAGGTGTGGTACCGGGGAGTCTCGTTCTTATTGGTGGGGATCCAGGGATTGGGAAATCAACCCTTCTCTT
ACAAGTATCGACTCAGCTGTCCCAAGTAGGGACTGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTCC
GTGCAGAGCGCTTGGGGGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTG
GAGCGCATCCAACCAGATTTTCTCATCATCGACTCTATCCAGACGATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTC
TGTGTCTCAGGTGCGTGAGGTAACGGCTGAACTCATGCAGTTGGCGAAGACTAATAACATTGCTATCTTTATCGTAGGAC
ATGTGACTAAGGAAGGAACCTTGGCAGGTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAG
CGCCACCATACCTTCCGTATTTTGAGGGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCA
GTCGGGTGGATTGGTTGAGGTCCTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAA
TCGTTGTGACCATGGAAGGGACTCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCT
AAGCGCACAACGACAGGACTTGATTTCAATCGTGCAAGTCTGATCATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTCTT
GCAAAATCAGGATGCCTATCTCAAATCTGCTGGTGGCGTGAAATTGGATGAGCCTGCTATTGACTTAGCCGTTGCAGTGG
CTATTGCCTCTAGTTACAAGGACAAGCCTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATT
CGGCGCGTGAATCGTATCGAACAACGTATCAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTC
CTTGACAGGAATCACTCCACCCAAGGAAATTGAAGTCATTGGTGTGACAACGATTCAAGAAGTTTTGAAAAAGGTCTTTG
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.338

99.78

0.991
  radA Streptococcus mitis SK321

99.117

99.78

0.989
  radA Streptococcus pneumoniae Rx1

99.117

99.78

0.989
  radA Streptococcus pneumoniae D39

99.117

99.78

0.989
  radA Streptococcus pneumoniae R6

99.117

99.78

0.989
  radA Streptococcus pneumoniae TIGR4

99.117

99.78

0.989
  radA Bacillus subtilis subsp. subtilis str. 168

63.355

99.78

0.632