Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZO14_RS08780 Genome accession   NZ_CP080066
Coordinates   1831819..1833246 (-) Length   475 a.a.
NCBI ID   WP_000980629.1    Uniprot ID   -
Organism   Escherichia coli strain 19SZHZ803Rt     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1826819..1838246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO14_RS08750 (KZO14_08760) yeeZ 1826874..1827698 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  KZO14_RS08755 (KZO14_08765) yeeY 1827744..1828673 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KZO14_RS08760 (KZO14_08770) yoeI 1828888..1828950 (+) 63 WP_010723108.1 membrane protein YoeI -
  KZO14_RS08765 (KZO14_08775) plaP 1828940..1830298 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KZO14_RS08770 (KZO14_08780) tsuA 1830477..1831535 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  KZO14_RS08775 (KZO14_08785) tsuB 1831549..1831776 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KZO14_RS08780 (KZO14_08790) sbcB 1831819..1833246 (-) 1428 WP_000980629.1 exodeoxyribonuclease I Machinery gene
  KZO14_RS08785 (KZO14_08795) dacD 1833455..1834621 (+) 1167 WP_001366021.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZO14_RS08790 (KZO14_08800) sbmC 1834740..1835213 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  KZO14_RS08795 (KZO14_08805) yeeA 1835412..1836470 (+) 1059 WP_001200891.1 FUSC family protein -
  KZO14_RS08800 (KZO14_08810) tmaR 1836642..1836971 (+) 330 WP_000450409.1 DUF496 family protein -
  KZO14_RS08805 (KZO14_08815) - 1837072..1837368 (-) 297 Protein_1725 EutP/PduV family microcompartment system protein -
  KZO14_RS08810 (KZO14_08820) - 1837347..1837706 (+) 360 WP_000543549.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54487.77 Da        Isoelectric Point: 5.4666

>NTDB_id=516618 KZO14_RS08780 WP_000980629.1 1831819..1833246(-) (sbcB) [Escherichia coli strain 19SZHZ803Rt]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEAWAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=516618 KZO14_RS08780 WP_000980629.1 1831819..1833246(-) (sbcB) [Escherichia coli strain 19SZHZ803Rt]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCATGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581