Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6H55_RS11955 Genome accession   NZ_CP066024
Coordinates   2453862..2455535 (+) Length   557 a.a.
NCBI ID   WP_010747998.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_998     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2448862..2460535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H55_RS11925 (I6H55_11925) - 2449182..2450033 (+) 852 WP_010747994.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  I6H55_RS11930 (I6H55_11930) xseA 2450034..2451386 (+) 1353 WP_010747995.1 exodeoxyribonuclease VII large subunit -
  I6H55_RS11935 (I6H55_11935) - 2451367..2451588 (+) 222 WP_005225774.1 exodeoxyribonuclease VII small subunit -
  I6H55_RS11940 (I6H55_11940) - 2451585..2452481 (+) 897 WP_010747996.1 polyprenyl synthetase family protein -
  I6H55_RS11945 (I6H55_11945) - 2452478..2453299 (+) 822 WP_010747997.1 TlyA family RNA methyltransferase -
  I6H55_RS11950 (I6H55_11950) argR 2453397..2453846 (+) 450 WP_005225777.1 arginine repressor -
  I6H55_RS11955 (I6H55_11955) recN 2453862..2455535 (+) 1674 WP_010747998.1 DNA repair protein RecN Machinery gene
  I6H55_RS11960 (I6H55_11960) - 2455631..2456362 (+) 732 WP_010747999.1 alpha/beta family hydrolase -
  I6H55_RS11965 (I6H55_11965) - 2456763..2457617 (+) 855 WP_010748000.1 phosphate ABC transporter substrate-binding protein PstS -
  I6H55_RS11970 (I6H55_11970) pstC 2457715..2458635 (+) 921 Protein_2335 phosphate ABC transporter permease subunit PstC -
  I6H55_RS11975 (I6H55_11975) pstA 2458635..2459519 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  I6H55_RS11980 (I6H55_11980) pstB 2459533..2460339 (+) 807 WP_010748003.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62560.72 Da        Isoelectric Point: 4.5175

>NTDB_id=516535 I6H55_RS11955 WP_010747998.1 2453862..2455535(+) (recN) [Enterococcus casseliflavus strain FDAARGOS_998]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQLEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=516535 I6H55_RS11955 WP_010747998.1 2453862..2455535(+) (recN) [Enterococcus casseliflavus strain FDAARGOS_998]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACCTGCACCTGTCTTTTCATGAGGGGATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCTGGAGTTCAAAGAGCTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTACAAAGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
TAATGGTCGAACTGTTACCTTGTCGGTTTTGCGCCAAATCGGCTTGTTTTTAGTTGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCGGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAACAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGTCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATTCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTAGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATTCTTGCTTATTATGACGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGCTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCCCGAATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACAATTGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488