Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H55_RS05965 Genome accession   NZ_CP066024
Coordinates   1184557..1185927 (+) Length   456 a.a.
NCBI ID   WP_010748480.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_998     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1179557..1190927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H55_RS05935 (I6H55_05935) - 1180024..1180842 (+) 819 WP_010748475.1 ZIP family metal transporter -
  I6H55_RS05940 (I6H55_05940) - 1180898..1181101 (-) 204 WP_010748476.1 hypothetical protein -
  I6H55_RS05945 (I6H55_05945) - 1181252..1181653 (+) 402 WP_010748477.1 DUF4809 family protein -
  I6H55_RS05950 (I6H55_05950) - 1181757..1183001 (-) 1245 WP_010748478.1 glutamate-5-semialdehyde dehydrogenase -
  I6H55_RS05955 (I6H55_05955) proB 1182998..1183813 (-) 816 WP_005226390.1 glutamate 5-kinase -
  I6H55_RS05960 (I6H55_05960) - 1184003..1184512 (+) 510 WP_010748479.1 hypothetical protein -
  I6H55_RS05965 (I6H55_05965) radA 1184557..1185927 (+) 1371 WP_010748480.1 DNA repair protein RadA Machinery gene
  I6H55_RS05970 (I6H55_05970) - 1186096..1187235 (+) 1140 WP_005226396.1 PIN/TRAM domain-containing protein -
  I6H55_RS05975 (I6H55_05975) gltX 1187405..1188862 (+) 1458 WP_010748481.1 glutamate--tRNA ligase -
  I6H55_RS05980 (I6H55_05980) epsC 1189123..1189659 (+) 537 WP_034695645.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49618.31 Da        Isoelectric Point: 8.3034

>NTDB_id=516526 I6H55_RS05965 WP_010748480.1 1184557..1185927(+) (radA) [Enterococcus casseliflavus strain FDAARGOS_998]
MAKKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVLPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=516526 I6H55_RS05965 WP_010748480.1 1184557..1185927(+) (radA) [Enterococcus casseliflavus strain FDAARGOS_998]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAATTGTGGGTACAGTTCCCCTAAATATTTAGGGAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTGGAAGAAGTGATCCAAGAAACCGCCGATCGTCGAGTACGTACGACATTGACGGGGC
AAAAGATGCAGCCGACGAAAATCGCCGATGTCCTACCGAAAAAAGAACCGCGAGTCCAAACGAAACTTGCTGAGTTGAAT
CGCGTCTTAGGCGGCGGCGTGGTCCCAGGCTCCTTGATTTTGATCGGTGGGGATCCAGGGATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCCCAGCAATTAGCAGCGATCGGCGGGACGGTCTTGTATGTGTCAGGAGAAGAAAGTGCCGAACAAATCA
AAATGCGGGCGCAGCGCTTAGGCGCCATCGACACAGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGCCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGCGTGGC
AGGCAGTGTCAGCCAAGTGCGAGAAACGACCGCAGAATTGCTGAAAATCGCCAAAACCAATGGCATCGCCATCTTTATCG
TTGGCCACGTGACGAAGGAAGGCTCGATCGCAGGACCGCGGATGCTGGAGCATATGGTGGATACCGTCTTGTATTTCGAA
GGCGAAAAGCACCACAGTTTTCGAATTTTGCGGGCCGTAAAAAACCGCTTTGGGTCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGCGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACTGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAAATCCAAGCACTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGCGTCTCGCTGATCATGGCGGTTTTAGAAAAACGGGCAGGCTT
GCTGCTGCAAAATCAAGATGCCTATTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCTGCGATCGATCTAGCGATCG
CTGTTAGTATCGCGTCTAGCTACAAAGAAAAAGGCACCAGCCCGACGGAGTGTTTTATCGGTGAAATTGGCTTGACGGGT
GAGATTCGCCGAGTCAACGCGATCGAGCAACGGGTCAAAGAGGTGCAAAAACTAGGTTTTACGAAAGTTTATTTGCCGAA
AAATAATCTGACTGGCTGGCAGCCGCCCAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTGCGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Streptococcus pneumoniae Rx1

74.505

99.781

0.743
  radA Streptococcus pneumoniae D39

74.505

99.781

0.743
  radA Streptococcus pneumoniae R6

74.505

99.781

0.743
  radA Streptococcus pneumoniae TIGR4

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664