Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   KW2_RS02140 Genome accession   NC_022369
Coordinates   434628..435344 (-) Length   238 a.a.
NCBI ID   WP_021036746.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 429628..440344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS02125 (kw2_0428) cdaA 431324..432202 (+) 879 WP_021036744.1 diadenylate cyclase CdaA -
  KW2_RS02130 (kw2_0429) - 432192..433151 (+) 960 WP_014572070.1 CdaR family protein -
  KW2_RS02135 (kw2_0430) glmM 433196..434554 (+) 1359 WP_021036745.1 phosphoglucosamine mutase -
  KW2_RS02140 (kw2_0431) treR 434628..435344 (-) 717 WP_021036746.1 trehalose operon repressor Regulator
  KW2_RS02145 (kw2_0432) - 435455..435940 (+) 486 WP_021036747.1 PTS sugar transporter subunit IIA -
  KW2_RS02150 (kw2_0433) - 436081..437646 (+) 1566 WP_021036748.1 PTS transporter subunit EIIC -
  KW2_RS02155 (kw2_0434) - 437713..440022 (+) 2310 WP_021036749.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27527.10 Da        Isoelectric Point: 6.0939

>NTDB_id=51649 KW2_RS02140 WP_021036746.1 434628..435344(-) (treR) [Lactococcus cremoris subsp. cremoris KW2]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSISYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIKFESIQITPALSETTGFAIGDQALSILRRRKVDGKFSILDWDLFLEKYADGLTPAHAQNSTY
DYLEGPLGLDIAYAQKEVTIDFACEDDFTYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=51649 KW2_RS02140 WP_021036746.1 434628..435344(-) (treR) [Lactococcus cremoris subsp. cremoris KW2]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAATGATATCTATAAAACGAACGATATTCTTCC
AAGCGAGAATGAACTTTCTATTAGTTATGAAAGTAGTCGTTCAACCGTCAGACAAGCTTTAAAAATTTTAGAAGAAAAAG
GGCTCATCCAAAGAAGACATGGCTATGGTAGCATTGTCCTCGCTCACGATCGGCTCCTTTTCCCTATTTCCGGCTTAACT
TCATATAAAGAATTGCAAACTTCAATGGGTTTTCACAGTGAAACTGAAGTAATAAAATTTGAAAGTATACAAATTACCCC
AGCTCTTTCAGAAACTACTGGATTCGCCATCGGCGACCAAGCCCTTAGTATTCTTAGAAGAAGAAAAGTAGATGGTAAAT
TTTCCATTTTGGATTGGGATTTATTTTTAGAAAAATACGCTGATGGTTTGACCCCCGCACATGCCCAAAATTCTACTTAC
GATTATTTAGAAGGGCCTTTGGGACTTGATATTGCCTATGCCCAAAAAGAAGTTACCATTGATTTTGCTTGTGAAGATGA
TTTTACATATCTTGATTTAAATCCGAAGGACCATCATGTTGTTTCCGTGAAATCTCATGTCTATCTTGCCGATAATACAC
TTTTCCAGTATACTGAATCACGACATCAGGTTGACCGTTTTCGTTTTACAGAGTTTGCTAGACGTCAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

45.148

99.58

0.45