Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6H77_RS05605 Genome accession   NZ_CP066021
Coordinates   1165475..1166188 (-) Length   237 a.a.
NCBI ID   WP_000760677.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1155153..1174074 1165475..1166188 within 0


Gene organization within MGE regions


Location: 1155153..1174074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS05575 (I6H77_05575) - 1155153..1155347 (-) 195 WP_001082470.1 helix-turn-helix transcriptional regulator -
  I6H77_RS05580 (I6H77_05580) rsmH 1155510..1156460 (+) 951 WP_000159388.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  I6H77_RS05585 (I6H77_05585) ftsL 1156471..1156788 (+) 318 WP_000840795.1 cell division protein FtsL -
  I6H77_RS05590 (I6H77_05590) pbp2X 1156792..1159047 (+) 2256 WP_000816040.1 penicillin-binding protein PBP2X -
  I6H77_RS05595 (I6H77_05595) mraY 1159049..1160029 (+) 981 WP_000625795.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  I6H77_RS05600 (I6H77_05600) - 1160099..1165222 (-) 5124 WP_000716125.1 SIALI-17 repeat-containing surface protein -
  I6H77_RS05605 (I6H77_05605) treR 1165475..1166188 (-) 714 WP_000760677.1 trehalose operon repressor Regulator
  I6H77_RS05610 (I6H77_05610) treP 1166373..1168340 (+) 1968 WP_000514346.1 PTS system trehalose-specific EIIBC component -
  I6H77_RS05615 (I6H77_05615) treC 1168404..1170029 (+) 1626 WP_001162367.1 alpha,alpha-phosphotrehalase -
  I6H77_RS05620 (I6H77_05620) - 1170175..1170420 (+) 246 WP_000364994.1 YneF family protein -
  I6H77_RS05625 (I6H77_05625) racE 1170626..1171420 (+) 795 WP_000370365.1 glutamate racemase -
  I6H77_RS05630 (I6H77_05630) - 1171417..1172388 (+) 972 WP_000182437.1 nucleoside-triphosphate diphosphatase -
  I6H77_RS05635 (I6H77_05635) - 1172364..1172885 (+) 522 WP_001118939.1 metallophosphoesterase -
  I6H77_RS05640 (I6H77_05640) cbpB 1172882..1173343 (+) 462 WP_000560697.1 cyclic-di-AMP-binding protein CbpB -
  I6H77_RS05645 (I6H77_05645) xerD 1173340..1174074 (+) 735 WP_282644648.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27736.86 Da        Isoelectric Point: 8.2868

>NTDB_id=516484 I6H77_RS05605 WP_000760677.1 1165475..1166188(-) (treR) [Streptococcus oralis strain FDAARGOS_1020]
MKKYQQLFKQIQKTIQNETYAVGDFLPSEHDLMNQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELVPNLTRQIAEQSIY
SYIEDNLKLLIDYAQKEITIDHTSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=516484 I6H77_RS05605 WP_000760677.1 1165475..1166188(-) (treR) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAGAAATACCAACAACTATTTAAGCAAATCCAAAAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTCCC
CAGTGAGCACGACCTCATGAATCAGTATCAGGTGAGCCGTGACACCGTCCGAAAAGCTCTGTCCCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGGGGGCAAGGTTCCCAAGTCGTCAAAGAAGAAACGGTCAATTTCCCTGTCTCCAACCTAACC
AGCTACCAAGAACTGGTCCAGGAACTTGGACTTCGCTCTAAGACTAATGTCGTCAGCCTGGACAAGATCATTATCGATAA
AAAATCCTCACTGATAACCGGCTTTCCAGAGTTTCGGATGGTTTGGAAGGTAGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCGGTTCTGGATACGGACTATCTGGATATGGAACTGGTCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAC
TCGTATATAGAGGACAACCTCAAACTCCTTATTGATTATGCTCAGAAAGAAATCACCATTGACCACACTAGCGATCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCCATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAATTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGACATCCGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.872

99.156

0.574