Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H77_RS04055 Genome accession   NZ_CP066021
Coordinates   826597..827958 (-) Length   453 a.a.
NCBI ID   WP_078232941.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 821597..832958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS04030 (I6H77_04030) - 821931..823100 (-) 1170 WP_000366327.1 pyridoxal phosphate-dependent aminotransferase -
  I6H77_RS04035 (I6H77_04035) - 823252..824262 (+) 1011 WP_000009125.1 YeiH family protein -
  I6H77_RS04040 (I6H77_04040) - 824291..824728 (-) 438 WP_000076475.1 CoA-binding protein -
  I6H77_RS04045 (I6H77_04045) - 824848..825816 (-) 969 WP_000010177.1 ribose-phosphate diphosphokinase -
  I6H77_RS04050 (I6H77_04050) - 826030..826524 (-) 495 WP_002875379.1 beta-class carbonic anhydrase -
  I6H77_RS04055 (I6H77_04055) radA 826597..827958 (-) 1362 WP_078232941.1 DNA repair protein RadA Machinery gene
  I6H77_RS04060 (I6H77_04060) - 827972..828511 (-) 540 WP_002874984.1 histidine phosphatase family protein -
  I6H77_RS04065 (I6H77_04065) - 828513..828956 (-) 444 WP_000701998.1 dUTP diphosphatase -
  I6H77_RS04075 (I6H77_04075) tadA 829145..829612 (-) 468 WP_001110101.1 tRNA adenosine(34) deaminase TadA -
  I6H77_RS04080 (I6H77_04080) - 829813..831099 (-) 1287 WP_000205048.1 adenylosuccinate synthase -
  I6H77_RS09360 comW 831341..831577 (-) 237 WP_000939512.1 sigma(X)-activator ComW -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49473.96 Da        Isoelectric Point: 5.8766

>NTDB_id=516465 I6H77_RS04055 WP_078232941.1 826597..827958(-) (radA) [Streptococcus oralis strain FDAARGOS_1020]
MAKKKATFVCQNCEYNSPKYLGRCPNCGSWSSFVEEVEIAEVKNARVSLAGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPELSGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=516465 I6H77_RS04055 WP_078232941.1 826597..827958(-) (radA) [Streptococcus oralis strain FDAARGOS_1020]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGAGTACAACTCACCTAAGTATTTAGGACGCTGTCCAAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTAGAGATTGCAGAGGTCAAGAATGCGCGTGTGTCCTTGGCAGGTGAGAAAA
CCAAGCCTATGAAACTGGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTA
CTTGGAGGCGGAGTGGTTCCAGGAAGTCTCGTCCTAATTGGGGGAGATCCTGGAATCGGAAAATCAACTCTTCTCCTACA
AGTTTCAACCCAGTTATCTCAAGTTGGTACGGTTCTCTATGTCAGTGGGGAGGAATCTGCCCAGCAGATTAAACTCCGTG
CAGAGCGCTTGGGGGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAGGTGGAG
CGCATCCAACCAGACTTTCTCATTATTGACTCTATCCAGACGATTATGTCTCCTGAGCTTTCAGGGGTACAAGGGTCTGT
TTCTCAGGTGCGTGAGGTGACAGCTGAGCTCATGCAGCTGGCCAAGACTAATAACATTGCCATCTTTATCGTAGGGCATG
TGACCAAGGAAGGTACTCTGGCCGGCCCGCGTATGTTGGAGCATATGGTAGATACGGTGCTTTACTTTGAAGGGGAACGC
CACCATACCTTCCGTATCTTGAGAGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATCGGCATCTTTGAGATGCAGTC
AGGTGGATTGGTTGAGGTGCTCAATCCGAGTCAAGTTTTTCTAGAAGAGCGTTTGGATGGAGCAACTGGTTCGTCAATCG
TGGTAACTATGGAAGGGACACGTCCGATTTTGGCGGAAGTGCAAGCCTTGGTGACACCGACTATGTTTGGGAATGCTAAG
CGCACGACGACAGGACTTGATTTCAATCGTGCAAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTTTTGCA
AAACCAGGATGCCTATCTCAAATCTGCTGGTGGTGTAAAATTGGATGAGCCTGCCATTGACTTAGCCGTTGCAGTGGCTA
TTGCCTCTAGTTACAAGGACAAGCCTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGA
CGCGTGAATCGTATCGAACAACGTATCAATGAAGCGGCAAAATTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTT
GACAGGAATCACTCCACCCAAGGAAATTGAAGTCATTGGTGTGACAACGATTCAGGAAGTTTTGAAGAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

98.675

100

0.987
  radA Streptococcus mitis NCTC 12261

98.675

100

0.987
  radA Streptococcus pneumoniae Rx1

98.675

100

0.987
  radA Streptococcus pneumoniae D39

98.675

100

0.987
  radA Streptococcus pneumoniae R6

98.675

100

0.987
  radA Streptococcus pneumoniae TIGR4

98.675

100

0.987
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629