Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KZH79_RS19050 Genome accession   NZ_CP080011
Coordinates   4193932..4195260 (+) Length   442 a.a.
NCBI ID   WP_031757009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TL3773     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4188932..4200260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH79_RS19030 (KZH79_19030) - 4189769..4190335 (-) 567 WP_003084491.1 hypothetical protein -
  KZH79_RS19035 (KZH79_19035) rsmD 4190338..4190934 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KZH79_RS19040 (KZH79_19040) - 4190934..4192421 (-) 1488 WP_003102862.1 pitrilysin family protein -
  KZH79_RS19045 (KZH79_19045) - 4192414..4193811 (-) 1398 WP_003084498.1 pitrilysin family protein -
  KZH79_RS19050 (KZH79_19050) pilA 4193932..4195260 (+) 1329 WP_031757009.1 signal recognition particle-docking protein FtsY Machinery gene
  KZH79_RS19055 (KZH79_19055) ftsE 4195257..4195928 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  KZH79_RS19060 (KZH79_19060) ftsX 4195928..4196935 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  KZH79_RS19065 (KZH79_19065) rpoH 4197049..4197903 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  KZH79_RS19070 (KZH79_19070) - 4197968..4198573 (+) 606 WP_003084511.1 hypothetical protein -
  KZH79_RS19075 (KZH79_19075) mtgA 4198578..4199309 (-) 732 WP_073658746.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  KZH79_RS19080 (KZH79_19080) - 4199346..4199723 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  KZH79_RS19085 (KZH79_19085) thiS 4199826..4200026 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 46967.34 Da        Isoelectric Point: 4.7091

>NTDB_id=516463 KZH79_RS19050 WP_031757009.1 4193932..4195260(+) (pilA) [Pseudomonas aeruginosa strain TL3773]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMASLFL
GRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVIL
VVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGID
VLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVI
FALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=516463 KZH79_RS19050 WP_031757009.1 4193932..4195260(+) (pilA) [Pseudomonas aeruginosa strain TL3773]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGC
CGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTC
GGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCAC
CACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGC
AGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTG
GTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGT
CATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGG
TGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGAC
GTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGAT
CGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGG
CCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATC
TTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGA
GGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(152-217)

SRP54-type protein, GTPase domain (SRP54)

(237-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.113

95.928

0.462