Detailed information NTG0516426

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KZH79_RS08875
• Genome accession: NZ_CP080011
• Coordinates: 1983887..1984891 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain TL3773
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1978887..1989891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZH79_RS08860 (KZH79_08860)	-	1979371..1980378 (+)	1008	WP_191519407.1	PD40 domain-containing protein	-
KZH79_RS08865 (KZH79_08865)	mutS	1980504..1983071 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KZH79_RS08870 (KZH79_08870)	fdxA	1983138..1983461 (+)	324	WP_003092272.1	ferredoxin FdxA	-
KZH79_RS08875 (KZH79_08875)	rpoS	1983887..1984891 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KZH79_RS08880 (KZH79_08880)	-	1984996..1985889 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
KZH79_RS08885 (KZH79_08885)	-	1985935..1986570 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KZH79_RS08890 (KZH79_08890)	surE	1986603..1987352 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KZH79_RS08895 (KZH79_08895)	truD	1987340..1988407 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
KZH79_RS08900 (KZH79_08900)	ispF	1988404..1988877 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KZH79_RS08905 (KZH79_08905)	fghA	1988948..1989799 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=516426 KZH79_RS08875 WP_003113871.1 1983887..1984891(-) (rpoS) [Pseudomonas aeruginosa strain TL3773]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=516426 KZH79_RS08875 WP_003113871.1 1983887..1984891(-) (rpoS) [Pseudomonas aeruginosa strain TL3773]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653