Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6H93_RS15995 Genome accession   NZ_CP066016
Coordinates   3342129..3342947 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain FDAARGOS_1036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3337129..3347947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H93_RS15960 (I6H93_15960) - 3337711..3337841 (-) 131 Protein_3139 hypothetical protein -
  I6H93_RS15965 (I6H93_15965) rpoZ 3337880..3338158 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  I6H93_RS15970 (I6H93_15970) gmk 3338231..3338860 (-) 630 WP_000015937.1 guanylate kinase -
  I6H93_RS15975 (I6H93_15975) ispH 3338983..3339933 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6H93_RS15980 (I6H93_15980) fimU 3340103..3340576 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6H93_RS15985 (I6H93_15985) pilV 3340570..3341130 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  I6H93_RS15990 (I6H93_15990) pilW 3341131..3342132 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  I6H93_RS15995 (I6H93_15995) pilX 3342129..3342947 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6H93_RS16000 (I6H93_16000) pilY1 3342959..3346813 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  I6H93_RS16005 (I6H93_16005) pilY2 3346824..3347306 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  I6H93_RS16010 (I6H93_16010) pilE 3347303..3347728 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=516395 I6H93_RS15995 WP_000149374.1 3342129..3342947(+) (pilX) [Acinetobacter baumannii strain FDAARGOS_1036]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=516395 I6H93_RS15995 WP_000149374.1 3342129..3342947(+) (pilX) [Acinetobacter baumannii strain FDAARGOS_1036]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993