Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KXE03_RS23960 Genome accession   NZ_CP080007
Coordinates   5216666..5218027 (-) Length   453 a.a.
NCBI ID   WP_010793777.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain S-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5211666..5223027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXE03_RS23935 (KXE03_23925) yjiA 5211853..5212857 (-) 1005 WP_003094852.1 GTPase -
  KXE03_RS23940 (KXE03_23930) - 5212917..5213120 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  KXE03_RS23945 (KXE03_23935) - 5213169..5215235 (-) 2067 WP_003094859.1 carbon starvation CstA family protein -
  KXE03_RS23950 (KXE03_23940) - 5215573..5216079 (-) 507 WP_003094862.1 DUF3015 domain-containing protein -
  KXE03_RS23955 (KXE03_23945) mapZ 5216282..5216659 (+) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  KXE03_RS23960 (KXE03_23950) radA/sms 5216666..5218027 (-) 1362 WP_010793777.1 DNA repair protein RadA Machinery gene
  KXE03_RS23965 (KXE03_23955) - 5218137..5218571 (+) 435 WP_023114851.1 CopD family protein -
  KXE03_RS23970 (KXE03_23960) - 5218633..5218887 (-) 255 WP_003104887.1 YdcH family protein -
  KXE03_RS23975 (KXE03_23965) - 5218962..5219513 (-) 552 WP_003121338.1 ankyrin repeat domain-containing protein -
  KXE03_RS23980 (KXE03_23970) katB 5219567..5221108 (-) 1542 WP_003094881.1 catalase KatB -
  KXE03_RS23985 (KXE03_23975) - 5221105..5221593 (-) 489 WP_169433242.1 hypothetical protein -
  KXE03_RS23990 (KXE03_23980) mscL 5221636..5222049 (+) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  KXE03_RS23995 (KXE03_23985) - 5222155..5222931 (-) 777 WP_023084835.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48379.79 Da        Isoelectric Point: 6.8357

>NTDB_id=516377 KXE03_RS23960 WP_010793777.1 5216666..5218027(-) (radA/sms) [Pseudomonas aeruginosa strain S-1]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQPANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=516377 KXE03_RS23960 WP_010793777.1 5216666..5218027(-) (radA/sms) [Pseudomonas aeruginosa strain S-1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
CGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGTGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)

AAA domain (AAA_25)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466