Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   KW2_RS00385 Genome accession   NC_022369
Coordinates   74630..75889 (-) Length   419 a.a.
NCBI ID   WP_011834203.1    Uniprot ID   A2RHH4
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69630..80889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS00360 (kw2_0071) rpmG 70249..70398 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  KW2_RS00365 (kw2_0072) rpmF 70428..70601 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  KW2_RS00370 (kw2_0073) - 70964..72745 (+) 1782 WP_021036532.1 heavy metal translocating P-type ATPase -
  KW2_RS00375 (kw2_0074) - 72932..73780 (+) 849 WP_021036533.1 hypothetical protein -
  KW2_RS00380 (kw2_0075) spo0J 73790..74575 (-) 786 WP_021036534.1 ParB/RepB/Spo0J family partition protein Regulator
  KW2_RS00385 (kw2_0076) rarA 74630..75889 (-) 1260 WP_011834203.1 replication-associated recombination protein A Machinery gene
  KW2_RS00390 (kw2_0077) - 75933..76421 (-) 489 WP_021036535.1 GNAT family N-acetyltransferase -
  KW2_RS00395 (kw2_0078) - 76594..77061 (+) 468 WP_011675148.1 DUF3013 family protein -
  KW2_RS00400 (kw2_0079) - 77091..78644 (+) 1554 WP_021036536.1 ABC-F family ATP-binding cassette domain-containing protein -
  KW2_RS00405 (kw2_0080) - 78719..79003 (+) 285 WP_014571838.1 hypothetical protein -
  KW2_RS00410 (kw2_0081) - 79037..79777 (+) 741 WP_021036537.1 class I SAM-dependent methyltransferase -
  KW2_RS00415 (kw2_0082) - 79764..80252 (+) 489 WP_041168669.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46875.21 Da        Isoelectric Point: 5.9479

>NTDB_id=51636 KW2_RS00385 WP_011834203.1 74630..75889(-) (rarA) [Lactococcus cremoris subsp. cremoris KW2]
MVQNLARRMRPRNIDEIVGQRHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNIAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKALEPEDLEFAVN
LSLQDKERGFDFDVTIEDDALYFLVHSTNGDLRSTFNALELAVLSSNEHRVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAAVHTVTALSAAEKLGFPEARIPLANIIIDLAL
SPKSNSAYLAMDEALSDLGKYGNLAVPPHLQDGHYAGAKELGRSVEYQYAHNFPDHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWINEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=51636 KW2_RS00385 WP_011834203.1 74630..75889(-) (rarA) [Lactococcus cremoris subsp. cremoris KW2]
ATGGTACAAAATCTTGCAAGACGAATGAGACCTCGCAATATCGATGAAATTGTTGGTCAAAGACATTTAGTTGGTAAAGG
AAAAATCATCCGCAGAATGGTGGAAACTCAACTTCTTTCAAGTATGATTCTCTATGGCCCTCCAGGCATCGGTAAAACTT
CAATTGCTTCAGCAATTGCTGGAACCATGAACATTGCTTTTAGAACATTTAATGCAACAACTGATACTAAAAAAAGGCTC
CAAGAAATTGCTTCTGAAGCAGAATTTTCTGGTCAGCTTGTTTTACTTCTTGATGAAATCCATCGTTTAGATAAACCAAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATATTAATTGGAGCAACGACTGAAAATCCTTATTTTTCAG
TTGTACCCGCCATTCGCTCTCGTGTTCAAATTTTTGAACTGAAAGCTCTTGAACCAGAGGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGAGGCTTTGATTTTGACGTGACTATTGAAGATGATGCGCTCTATTTCTTAGTTCACTC
AACCAATGGAGACTTACGTTCTACATTTAATGCTTTAGAATTAGCTGTTCTTTCTTCAAACGAACACCGCGTTACCCTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCAGCAACTTTTGATAAGGATGGGGATGCTCATTACGATTTGCTGTCTGCT
CTGCAAAAATCTATTCGTGGGTCTGATGTCAATGCAAGTTTACACTATGCTGCACGTTTGATTGAGGGAGGGGACTTACA
AAGTCTAGCACGTCGTTTGACTGTCATGGCCTATGAAGATATTGGTTTAGCCAATCCCGATGCTGCAGTACATACCGTTA
CAGCCTTATCAGCAGCTGAGAAATTAGGGTTCCCAGAAGCACGGATTCCTCTTGCCAATATCATTATTGATTTGGCCTTA
TCTCCAAAATCAAACTCAGCTTATTTAGCAATGGACGAAGCCCTTTCGGACTTGGGAAAATATGGAAATCTTGCTGTGCC
ACCGCATTTACAAGATGGTCATTACGCCGGAGCTAAAGAATTAGGACGGTCTGTAGAATATCAATATGCTCATAATTTCC
CAGACCACTGGGTAAATCAACAATATTTACCAGATAAAATTAAAAATGCAGATTACTTCCGACCGGATGATATGGGAAGA
TATGAAAAAGCCCTCCATAGTCGGAAAGAATGGATTAATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-246)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RHH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.709

98.329

0.587