Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KW2_RS00220 Genome accession   NC_022369
Coordinates   41510..42265 (+) Length   251 a.a.
NCBI ID   WP_011834171.1    Uniprot ID   A2RHD8
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36510..47265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS00190 (kw2_0037) - 36686..37135 (+) 450 WP_021036514.1 GNAT family N-acetyltransferase -
  KW2_RS00195 (kw2_0038) - 37220..37462 (+) 243 WP_011675109.1 TM2 domain-containing protein -
  KW2_RS00200 (kw2_0039) - 37555..39177 (-) 1623 WP_021036515.1 SulP family inorganic anion transporter -
  KW2_RS00205 (kw2_0040) - 39387..39908 (+) 522 WP_011834169.1 GNAT family N-acetyltransferase -
  KW2_RS00215 (kw2_0042) - 40237..41412 (+) 1176 WP_021036516.1 pyridoxal phosphate-dependent aminotransferase -
  KW2_RS00220 (kw2_0043) recO 41510..42265 (+) 756 WP_011834171.1 DNA repair protein RecO Machinery gene
  KW2_RS00225 (kw2_0044) - 42379..43260 (+) 882 WP_021036517.1 Rgg/GadR/MutR family transcriptional regulator -
  KW2_RS00230 (kw2_0045) - 43372..44607 (+) 1236 WP_021036518.1 MFS transporter -
  KW2_RS00235 (kw2_0046) lpdA 44638..46056 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28701.93 Da        Isoelectric Point: 6.2373

>NTDB_id=51634 KW2_RS00220 WP_011834171.1 41510..42265(+) (recO) [Lactococcus cremoris subsp. cremoris KW2]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISADIFINAHASYIISLADAAISDNQYDPALYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVG
PFDFSYKFSGCLCPRHFDEDLRRSHLDPNVIYLINLFQEISLDELKKISIKAEMKAKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=51634 KW2_RS00220 WP_011834171.1 41510..42265(+) (recO) [Lactococcus cremoris subsp. cremoris KW2]
ATGCGTGATGCCGAAACTCAAGGTTTAGTACTTTATAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAGCGGATGTTTTTTGTCAAAAATTTTGGAAAATCTCCTTATGCCAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACAATTAATGACGGAGGATTTTCTTTTATCGAAGATGTCAGTGAAGTCGTTGTTTATAAAAAT
ATTAGTGCAGATATTTTCATCAATGCTCATGCCTCTTATATCATAAGTTTAGCTGATGCAGCCATTTCTGATAATCAATA
CGACCCAGCACTTTATGGATTTCTAAAGCGAAGTTTGGAACTTTTAGACCAAGGATTTGATATGGAAGTCGTGACTAATA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGGTTTCATTGAACTTTTCAGAATGTGCTTTTTGTCATAAAACAGTAGGA
CCATTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCAAGGCATTTCGATGAAGATTTGCGAAGAAGTCATCTTGA
TCCTAACGTGATTTATTTAATCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGAAA
TGAAAGCGAAAATTCGTCAATTTATTGATGGACTTTATGATGAATATGTTGGGATTCATTTAAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCGGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-72)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RHD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

53.659

98.008

0.526