Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KXE03_RS01940 Genome accession   NZ_CP080007
Coordinates   426663..428045 (+) Length   460 a.a.
NCBI ID   WP_219488020.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain S-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421663..433045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXE03_RS01920 (KXE03_01920) - 422500..423066 (-) 567 WP_003117889.1 hypothetical protein -
  KXE03_RS01925 (KXE03_01925) rsmD 423069..423665 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KXE03_RS01930 (KXE03_01930) - 423665..425152 (-) 1488 WP_003118797.1 pitrilysin family protein -
  KXE03_RS01935 (KXE03_01935) - 425145..426542 (-) 1398 WP_003084498.1 pitrilysin family protein -
  KXE03_RS01940 (KXE03_01940) pilA 426663..428045 (+) 1383 WP_219488020.1 signal recognition particle-docking protein FtsY Machinery gene
  KXE03_RS01945 (KXE03_01945) ftsE 428042..428713 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  KXE03_RS01950 (KXE03_01950) ftsX 428713..429720 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  KXE03_RS01955 (KXE03_01955) rpoH 429834..430688 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  KXE03_RS01960 (KXE03_01960) - 430753..431358 (+) 606 WP_003084511.1 hypothetical protein -
  KXE03_RS01965 (KXE03_01965) mtgA 431363..432094 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  KXE03_RS01970 (KXE03_01970) - 432131..432508 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  KXE03_RS01975 (KXE03_01975) thiS 432611..432811 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48991.37 Da        Isoelectric Point: 4.4594

>NTDB_id=516307 KXE03_RS01940 WP_219488020.1 426663..428045(+) (pilA) [Pseudomonas aeruginosa strain S-1]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQ
GLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLR
PVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRTPVIAQHTGAD
SASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVE
LTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=516307 KXE03_RS01940 WP_219488020.1 426663..428045(+) (pilA) [Pseudomonas aeruginosa strain S-1]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCG
AGCCCGTTGCGCCGCTGGCCGCCGCGCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAG
GGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCT
GCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCA
AGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGC
CCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTTGGGGTGAACGGCGTGGGCAA
GACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCC
GCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCACCCCGGTGATCGCCCAGCACACCGGCGCCGAC
TCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACG
CCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCC
ATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAATCAGGCCAAGCAGTTCAACCTCGCGGTGGAG
CTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCT
GCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCT
TCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(170-235)

SRP54-type protein, GTPase domain (SRP54)

(255-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.38

96.087

0.446