Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H54_RS27150 Genome accession   NZ_CP066006
Coordinates   5959282..5960667 (-) Length   461 a.a.
NCBI ID   WP_034397813.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_997     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5954282..5965667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H54_RS27125 (I6H54_27125) - 5955236..5956504 (-) 1269 WP_034397822.1 O-antigen ligase family protein -
  I6H54_RS27130 (I6H54_27130) - 5956636..5957502 (+) 867 WP_034397820.1 capsular polysaccharide synthesis protein -
  I6H54_RS27135 (I6H54_27135) - 5957534..5957743 (-) 210 WP_012202256.1 zinc-finger domain-containing protein -
  I6H54_RS27140 (I6H54_27140) - 5957779..5958717 (-) 939 WP_034397818.1 branched-chain amino acid transaminase -
  I6H54_RS27145 (I6H54_27145) - 5958762..5959202 (-) 441 WP_034397816.1 hypothetical protein -
  I6H54_RS27150 (I6H54_27150) radA 5959282..5960667 (-) 1386 WP_034397813.1 DNA repair protein RadA Machinery gene
  I6H54_RS27160 (I6H54_27160) - 5960955..5961767 (-) 813 WP_034397812.1 siderophore-interacting protein -
  I6H54_RS27165 (I6H54_27165) - 5961864..5962304 (+) 441 WP_012202251.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6H54_RS27170 (I6H54_27170) alr 5962305..5963408 (-) 1104 WP_034397810.1 alanine racemase -
  I6H54_RS27175 (I6H54_27175) lplT 5963543..5964844 (+) 1302 WP_034397807.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48142.71 Da        Isoelectric Point: 7.6673

>NTDB_id=516279 I6H54_RS27150 WP_034397813.1 5959282..5960667(-) (radA) [Delftia acidovorans strain FDAARGOS_997]
MAKDKTTFICNACGGTSPRWLGKCPACGAWNSLIEAVAEPASAGKNRLSQPQGYAGLANVQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIAGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=516279 I6H54_RS27150 WP_034397813.1 5959282..5960667(-) (radA) [Delftia acidovorans strain FDAARGOS_997]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGAGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGGCCTG
CGGGGCCTGGAACTCGCTGATCGAGGCCGTTGCCGAGCCTGCGAGCGCGGGCAAGAACCGGCTCAGCCAGCCCCAGGGCT
ATGCGGGCCTGGCCAATGTCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGATCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGACGCGCTGCACCGCGTCGGCCTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACCCAGCCGGCCGTGGTCGTCATCGACTCCATACAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACG
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTTCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCCGTGCCCGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGCCCCATGCTGGTGGAGATACAGGCCCTGGTCGAT
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCACGCGGGTGTGGCCTGCGCGGACCAGGATGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCTGCGGCCG
ATCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGTGGCCGCGCCCTGCCCAAGGGATTCCTCGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTCCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCACCATGGC
CGTGGTACCCAAGGCCAATGCGCCCAAGAAGGCTATTGCCGGTCTGACCGTGCATGCCGTCGAACGCGTGGACGAGGCCA
TGAATATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

99.783

0.486
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus mitis SK321

48.09

96.529

0.464
  radA Streptococcus pneumoniae TIGR4

47.982

96.746

0.464
  radA Streptococcus pneumoniae R6

47.982

96.746

0.464
  radA Streptococcus pneumoniae Rx1

47.982

96.746

0.464
  radA Streptococcus pneumoniae D39

47.982

96.746

0.464