Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   I6I17_RS07665 Genome accession   NZ_CP065999
Coordinates   1524586..1525053 (+) Length   155 a.a.
NCBI ID   WP_003781858.1    Uniprot ID   F0EXV9
Organism   Kingella denitrificans strain FDAARGOS_1060     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519586..1530053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I17_RS07645 (I6I17_07645) - 1520324..1522033 (+) 1710 WP_003781849.1 proline--tRNA ligase -
  I6I17_RS07650 (I6I17_07650) - 1522264..1522626 (-) 363 WP_003781852.1 Mth938-like domain-containing protein -
  I6I17_RS07655 (I6I17_07655) - 1522755..1524062 (+) 1308 WP_003781854.1 homoserine dehydrogenase -
  I6I17_RS07660 (I6I17_07660) - 1524055..1524531 (+) 477 WP_003781855.1 hypothetical protein -
  I6I17_RS07665 (I6I17_07665) recX 1524586..1525053 (+) 468 WP_003781858.1 recombination regulator RecX Regulator
  I6I17_RS07670 (I6I17_07670) - 1525050..1525295 (-) 246 WP_003781860.1 glutaredoxin family protein -
  I6I17_RS07675 (I6I17_07675) - 1525365..1525877 (-) 513 WP_003781862.1 peptidylprolyl isomerase -
  I6I17_RS07680 (I6I17_07680) - 1525936..1526502 (-) 567 WP_040564641.1 peptidylprolyl isomerase -
  I6I17_RS07685 (I6I17_07685) trmB 1526611..1527324 (-) 714 WP_003781866.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6I17_RS07690 (I6I17_07690) - 1527349..1528191 (-) 843 WP_040564215.1 class II glutamine amidotransferase -
  I6I17_RS07695 (I6I17_07695) - 1528322..1528882 (+) 561 WP_003781871.1 adenine phosphoribosyltransferase -
  I6I17_RS07700 (I6I17_07700) pnuC 1528973..1529662 (+) 690 WP_003781873.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 18169.41 Da        Isoelectric Point: 8.4603

>NTDB_id=516253 I6I17_RS07665 WP_003781858.1 1524586..1525053(+) (recX) [Kingella denitrificans strain FDAARGOS_1060]
MKTEKSLRARAMDYVARRELSRAQLHKKLQPYAEDEDELERVLNEFAQKNWQSDERFTQAFVRSKSIKHGSARLQQELKA
HGVSADLIRDALPSREEELRNAIGVARKKFKQPAQNFEEKQKQMRFLLYRGFSSGIAQAALKADWDEEELWDSED

Nucleotide


Download         Length: 468 bp        

>NTDB_id=516253 I6I17_RS07665 WP_003781858.1 1524586..1525053(+) (recX) [Kingella denitrificans strain FDAARGOS_1060]
ATGAAAACAGAAAAATCGTTACGCGCCCGCGCCATGGATTATGTGGCCCGCCGCGAACTGAGCCGCGCGCAGCTGCACAA
AAAATTGCAGCCCTATGCCGAAGACGAAGACGAATTGGAGCGCGTGTTAAATGAATTTGCCCAAAAAAACTGGCAGTCGG
ACGAACGTTTCACGCAAGCATTCGTCCGCAGCAAAAGCATCAAACACGGCTCGGCGCGTTTGCAGCAGGAATTGAAGGCG
CACGGCGTTTCGGCCGATTTGATTCGCGACGCCCTGCCCAGCCGCGAAGAAGAATTGCGCAATGCCATCGGCGTGGCGCG
GAAGAAATTCAAGCAGCCTGCACAAAATTTTGAAGAAAAACAAAAGCAAATGCGCTTCCTGCTTTATCGCGGCTTTTCCA
GCGGCATCGCGCAGGCTGCTTTGAAAGCTGATTGGGACGAAGAAGAACTTTGGGATTCTGAAGACTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(34-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0EXV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

58.503

94.839

0.555