Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I17_RS05020 Genome accession   NZ_CP065999
Coordinates   1000965..1002344 (+) Length   459 a.a.
NCBI ID   WP_003780850.1    Uniprot ID   -
Organism   Kingella denitrificans strain FDAARGOS_1060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995965..1007344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I17_RS05005 (I6I17_05005) tkt 996621..998600 (+) 1980 WP_003780847.1 transketolase -
  I6I17_RS05010 (I6I17_05010) pseI 998779..999828 (+) 1050 WP_003780848.1 pseudaminic acid synthase -
  I6I17_RS05015 (I6I17_05015) - 999941..1000858 (+) 918 WP_003780849.1 hypothetical protein -
  I6I17_RS05020 (I6I17_05020) radA 1000965..1002344 (+) 1380 WP_003780850.1 DNA repair protein RadA Machinery gene
  I6I17_RS05025 (I6I17_05025) - 1002492..1002794 (+) 303 WP_003780852.1 hypothetical protein -
  I6I17_RS05030 (I6I17_05030) - 1003152..1003820 (+) 669 WP_003780855.1 hypothetical protein -
  I6I17_RS05035 (I6I17_05035) - 1003972..1004979 (+) 1008 WP_115324734.1 IS5 family transposase -
  I6I17_RS05040 (I6I17_05040) - 1005339..1005761 (-) 423 WP_003780857.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49502.21 Da        Isoelectric Point: 7.3638

>NTDB_id=516248 I6I17_RS05020 WP_003780850.1 1000965..1002344(+) (radA) [Kingella denitrificans strain FDAARGOS_1060]
MAKSPKTLYTCTECGGTVPKWQGKCPHCGEWNTLQEGIAAPEPKNARFQSWAADTTQVQELSKVTAAEVPREPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTVALMAKKRKVLYVSGEESAQQVALRAQRLGLDADGVHLLAEIRLEAVQAA
LKQHQPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQFTRMAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMLENGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFINAVGGVKISEPAADLAVILAMVSSFRNKPLPEKMVAFGEVGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANLPRSRKEFPGLEIFGVERLDEAVRLCRDLAE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=516248 I6I17_RS05020 WP_003780850.1 1000965..1002344(+) (radA) [Kingella denitrificans strain FDAARGOS_1060]
ATGGCCAAATCCCCCAAAACCCTCTACACCTGCACCGAATGCGGCGGCACCGTGCCCAAGTGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACCTTGCAGGAAGGCATCGCCGCGCCCGAGCCGAAAAACGCCCGTTTCCAATCGTGGGCGGCGG
ACACCACGCAAGTGCAGGAACTCTCCAAAGTTACCGCCGCCGAAGTGCCGCGCGAACCCACCGGCATGGGCGAGCTCGAT
CGCGTGCTCGGCGGCGGGCTGGTGGACGGCGCGGTGATTTTGTTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCT
GCTGCAAACCGTCGCCCTGATGGCGAAAAAACGCAAAGTGCTGTATGTGTCGGGCGAGGAATCGGCGCAACAGGTCGCCC
TGCGCGCGCAGCGGCTGGGGCTGGATGCGGACGGCGTGCATTTGCTGGCGGAAATCCGTTTGGAAGCAGTGCAGGCTGCT
TTGAAGCAGCACCAGCCCGCCGTGGTGGTTATCGACTCGATTCAAACCATGTATTCCGACCAGATTACCTCCGCGCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGCGCCGCCCAGTTCACCCGCATGGCCAAGCAGATGGGCATCGCCATGATTTTTGTCG
GCCACGTCACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTCGAACACATGGTGGATACCGTGCTGTATTTCGAAGGC
GACCAGCATTCCAATTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCCAACGAGCTGGGCGTGTTCGCCAT
GCTGGAAAACGGCCTCAAAGGCGTGTCCAACCCCTCCGCCATCTTTCTCGCCAGCTACCGCGACGACGTGGCCGGTTCGT
GCGTGCTGGTCACGCAGGAAGGCAGCCGCCCGCTGCTGGTGGAAATCCAAGCGCTGGTGGACGACGCGCACGGCTTCACG
CCCAAGCGGCTTACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTCTTGGCAGTGCTCAACCGCCACGCCGGCATTGC
CTGCTTCGACCAAGACGTGTTCATCAACGCGGTGGGCGGCGTGAAAATCAGCGAACCGGCGGCGGATTTGGCGGTGATTC
TGGCGATGGTGTCCAGCTTCCGCAACAAGCCGCTGCCCGAAAAAATGGTGGCCTTCGGCGAAGTCGGCCTGAGCGGCGAA
GTGCGCCCCGTGGCACGCGGGCAGGAGCGGCTGAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTGCCCAAAGC
CAACCTGCCGCGCAGCAGAAAAGAATTCCCCGGCCTGGAAATCTTCGGCGTGGAACGGCTGGATGAAGCGGTGCGGCTGT
GCAGGGATTTGGCGGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(78-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.439

99.346

0.501
  radA Streptococcus pneumoniae Rx1

49.184

93.464

0.46
  radA Streptococcus pneumoniae D39

49.184

93.464

0.46
  radA Streptococcus pneumoniae R6

49.184

93.464

0.46
  radA Streptococcus pneumoniae TIGR4

49.184

93.464

0.46
  radA Streptococcus mitis SK321

49.184

93.464

0.46
  radA Streptococcus mitis NCTC 12261

48.951

93.464

0.458