Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I07_RS18760 Genome accession   NZ_CP065997
Coordinates   4122809..4124173 (+) Length   454 a.a.
NCBI ID   WP_006396055.1    Uniprot ID   -
Organism   Achromobacter deleyi strain FDAARGOS_1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4117809..4129173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I07_RS18740 (I6I07_18740) hpaE 4118815..4120281 (+) 1467 WP_198483225.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  I6I07_RS18745 (I6I07_18745) hpaD 4120317..4121168 (+) 852 WP_198483226.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  I6I07_RS18750 (I6I07_18750) hpaR 4121170..4121613 (-) 444 WP_035361752.1 homoprotocatechuate degradation operon regulator HpaR -
  I6I07_RS18755 (I6I07_18755) - 4121728..4122375 (-) 648 WP_198483227.1 hypothetical protein -
  I6I07_RS18760 (I6I07_18760) radA 4122809..4124173 (+) 1365 WP_006396055.1 DNA repair protein RadA Machinery gene
  I6I07_RS18765 (I6I07_18765) - 4124186..4124959 (+) 774 WP_198483228.1 sulfite exporter TauE/SafE family protein -
  I6I07_RS18770 (I6I07_18770) - 4125162..4125401 (+) 240 WP_006396053.1 hypothetical protein -
  I6I07_RS18775 (I6I07_18775) - 4125601..4126557 (-) 957 WP_198483229.1 2-hydroxyacid dehydrogenase -
  I6I07_RS18780 (I6I07_18780) - 4126668..4127639 (-) 972 WP_198483230.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  I6I07_RS18785 (I6I07_18785) - 4127713..4128714 (-) 1002 WP_198483231.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48205.28 Da        Isoelectric Point: 6.9553

>NTDB_id=516189 I6I07_RS18760 WP_006396055.1 4122809..4124173(+) (radA) [Achromobacter deleyi strain FDAARGOS_1050]
MAKTRTVYVCAECGGTTPKWQGKCPHCNAWNTLEETVESAAPAAAASHRYAPLASSSPVRSLSEIEARETPRTPTGLEEF
DRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSESTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQA
AVSEQKPSVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAP
NPRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAG
EIRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=516189 I6I07_RS18760 WP_006396055.1 4122809..4124173(+) (radA) [Achromobacter deleyi strain FDAARGOS_1050]
ATGGCCAAAACCCGAACCGTCTATGTGTGCGCCGAATGCGGCGGCACCACCCCGAAGTGGCAAGGCAAGTGTCCGCACTG
CAACGCCTGGAACACCCTGGAAGAAACCGTGGAGTCGGCCGCGCCGGCCGCCGCGGCCTCGCACCGCTACGCGCCGCTGG
CCTCCAGCAGCCCGGTGCGCAGCCTGTCCGAGATCGAGGCGCGTGAAACGCCGCGCACCCCCACTGGGCTGGAGGAGTTC
GACCGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACCCT
GTTGCTGCAGGCGCTGGCCTCGCTGTCGGAAAGCACCAACGTCCTGTACGTCACCGGCGAGGAATCGGCCGAGCAGGTGG
CGCTGCGCGCGCGCCGGCTGGGGTTGCAGACTGGCAACGTCAACCTGCTGGCGGAAATCCGCCTGGAGGCGATCCAGGCC
GCGGTGTCCGAGCAGAAGCCCAGCGTGGCGGTCATCGATTCGATCCAGACCCTCTACAGCGGCGAGCTGACCGCCGCGCC
CGGCTCGGTGTCGCAGGTGCGCGAGTGCGCCGCGCAGCTGACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTCATGA
TCGGCCACGTCACCAAGGACGGCGCGCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTCGAG
GGCGACACGCATTCGTCGTTCCGCCTGGTGCGGGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGC
CATGACCGACCGCGGCCTGCGCGGCGTGGCCAACCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCCGGCT
CCTGCGTGATGGCCACGCAGGAGGGCACGCGCCCGCTGCTGGTCGAGATCCAGGCGCTGGTGGACAGCTCCCACGCGCCC
AACCCGCGCCGCCTGACGGTCGGCCTGGAGGGCAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGCCGGCGT
CTCGACCTTCGACCAGGACGTGTTCGTCAACGCCGTGGGCGGGGTGCGCATCACCGAGCCCGCCGCCGACCTGCCGGTGC
TGCTGGCCATCATGTCGTCCCTGCGTGACCGGCCTTTGCCGCGCGGCCTGATCGCCTTCGGCGAAGTCGGCCTGGCGGGC
GAGATCCGGCCCGCGCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAGCTGGGTTTCTCGATCGCGCTGATTCCCAA
GGCCAACGCGCCGCGCCAGCCCATCGAGGGGCTGGAGATCTGGGCGGTCGACCGGCTCGATGCCGCGCTCGACAAGCTGC
GCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

100

0.513
  radA Streptococcus mitis NCTC 12261

46.696

100

0.467
  radA Streptococcus pneumoniae D39

48.946

94.053

0.46
  radA Streptococcus pneumoniae TIGR4

48.946

94.053

0.46
  radA Streptococcus mitis SK321

48.946

94.053

0.46
  radA Streptococcus pneumoniae R6

48.946

94.053

0.46
  radA Streptococcus pneumoniae Rx1

48.946

94.053

0.46