Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6I07_RS11350 Genome accession   NZ_CP065997
Coordinates   2531486..2532508 (+) Length   340 a.a.
NCBI ID   WP_420094574.1    Uniprot ID   -
Organism   Achromobacter deleyi strain FDAARGOS_1050     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2526486..2537508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I07_RS11325 (I6I07_11325) - 2527849..2528232 (+) 384 WP_054428947.1 MOSC N-terminal beta barrel domain-containing protein -
  I6I07_RS11330 (I6I07_11330) - 2528281..2529501 (-) 1221 WP_198486702.1 benzoate/H(+) symporter BenE family transporter -
  I6I07_RS11335 (I6I07_11335) - 2529498..2529749 (-) 252 WP_006391351.1 YfhL family 4Fe-4S dicluster ferredoxin -
  I6I07_RS11340 (I6I07_11340) coaD 2529936..2530439 (-) 504 WP_198486703.1 pantetheine-phosphate adenylyltransferase -
  I6I07_RS11345 (I6I07_11345) rsmD 2530498..2531064 (-) 567 WP_198487490.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6I07_RS11350 (I6I07_11350) pilA 2531486..2532508 (+) 1023 WP_420094574.1 signal recognition particle-docking protein FtsY Machinery gene
  I6I07_RS11355 (I6I07_11355) - 2532632..2534290 (-) 1659 WP_198486705.1 CYTH and CHAD domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 35595.08 Da        Isoelectric Point: 7.4073

>NTDB_id=516186 I6I07_RS11350 WP_420094574.1 2531486..2532508(+) (pilA) [Achromobacter deleyi strain FDAARGOS_1050]
MAPPPVVTPPPVVAAPVPATIVPAPAAPEPESEPAPKKASWLSRLKQGLSRTGQSIGGIFVGVKVDENLFEELESALIMA
DAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERAFDLKRTQPLVVMIAGVNGAGKTTSIGKLAHTFQ
RQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARGVGVVMVDTAGRLPTQLHLMEELKK
IRRVIGKADPAAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGE
SLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=516186 I6I07_RS11350 WP_420094574.1 2531486..2532508(+) (pilA) [Achromobacter deleyi strain FDAARGOS_1050]
GTGGCACCGCCGCCCGTCGTTACACCGCCGCCGGTCGTCGCCGCGCCGGTGCCTGCCACGATTGTGCCGGCCCCCGCTGC
GCCCGAACCCGAGTCCGAGCCCGCGCCCAAGAAGGCGTCGTGGCTGTCGCGGCTCAAGCAGGGCCTGTCGCGCACCGGCC
AGAGCATTGGCGGCATTTTCGTCGGCGTCAAGGTCGACGAGAACCTGTTCGAGGAACTCGAATCGGCGCTCATTATGGCC
GATGCCGGCCTGGAGGCCACCGAGAAGCTGCTGACCGCGCTGCGCGCGCGGGTCAAGAAAGAGCGCATCGAGGACCCGGC
CAAGGTCAAGACCGCGCTGCGCCAGCTGCTGGCCGATCACCTGCGCCCGCTGGAGCGCGCCTTCGACCTGAAGCGCACGC
AGCCGCTGGTGGTGATGATCGCGGGCGTCAACGGCGCCGGCAAGACGACTTCCATCGGCAAGCTGGCGCACACCTTCCAG
CGCCAGGGCGCGAGCGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCCGCGGCGCGCGAGCAGCTGATCGAATGGGGCAG
CCGCAACAACGTCACCGTGATCTCGCAGGATGGCGGCGATCCGGCGGCGGTGGCGTTCGACTCGGTCAACGCCGGCCGCG
CGCGCGGCGTGGGCGTGGTGATGGTGGACACGGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAACTGAAGAAG
ATCCGCCGCGTCATCGGCAAGGCCGACCCGGCCGCGCCGCACGAAGTGCTGCTGGTGGTGGACGGCAACACCGGCCAGAA
CGCGCTGGCGCAGATCCGCGCGTTCGACGCGGCCATCACCCTGACGGGCCTGGTCGTGACCAAGCTGGACGGCACCGCCA
AGGGCGGCACGCTGGCGGCCGTGGCGGCGGGCAGCCAGGGCGTGCGGCCGATCCCGGTGTACTGGATCGGCGTGGGCGAA
AGCCTGGAAGACCTGCAGCCGTTCGTGGCCGACGAATTCGCCGGCGCTCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(54-115)

SRP54-type protein, GTPase domain (SRP54)

(136-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.497

90

0.526