Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6I07_RS06475 Genome accession   NZ_CP065997
Coordinates   1433597..1435042 (-) Length   481 a.a.
NCBI ID   WP_198486047.1    Uniprot ID   A0A7T4B5X2
Organism   Achromobacter deleyi strain FDAARGOS_1050     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1428597..1440042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I07_RS06450 (I6I07_06450) - 1429395..1430096 (+) 702 WP_198486044.1 hypothetical protein -
  I6I07_RS06455 (I6I07_06455) bfr 1430184..1430660 (-) 477 WP_006386993.1 bacterioferritin -
  I6I07_RS06460 (I6I07_06460) - 1430990..1431904 (-) 915 WP_198486045.1 DMT family transporter -
  I6I07_RS06465 (I6I07_06465) - 1432017..1432937 (+) 921 WP_198486046.1 LysR substrate-binding domain-containing protein -
  I6I07_RS06470 (I6I07_06470) - 1432907..1433206 (-) 300 WP_104021657.1 (2Fe-2S)-binding protein -
  I6I07_RS06475 (I6I07_06475) rpoN/rpoN1 1433597..1435042 (-) 1446 WP_198486047.1 RNA polymerase factor sigma-54 Machinery gene
  I6I07_RS06480 (I6I07_06480) - 1435041..1435688 (+) 648 WP_198486048.1 hypothetical protein -
  I6I07_RS06485 (I6I07_06485) - 1435885..1436862 (+) 978 WP_198486049.1 tripartite tricarboxylate transporter substrate binding protein -
  I6I07_RS06490 (I6I07_06490) leuA 1437270..1438979 (+) 1710 WP_006392282.1 2-isopropylmalate synthase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52572.96 Da        Isoelectric Point: 4.8032

>NTDB_id=516184 I6I07_RS06475 WP_198486047.1 1433597..1435042(-) (rpoN/rpoN1) [Achromobacter deleyi strain FDAARGOS_1050]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLADNPLLERDDEPSSVETQAESERESSVQDDEP
APERETPVDEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILSWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSDCLLLQLRNPDLGRLPEAADPKALACARLICGQHLALLATGNNARLCAA
VGCDEATLRVAHALILRLEPRPGRAWTVPAADYAVPDVIVRRTRRGWQVTLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QAQLQQAKWMIRNVEQRFDTILRVSQAIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAVA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=516184 I6I07_RS06475 WP_198486047.1 1433597..1435042(-) (rpoN/rpoN1) [Achromobacter deleyi strain FDAARGOS_1050]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGCCAGCATCTCACGCTGACCCCTCAACTGCA
GCAATCCATCCGGTTGCTGCAGCTGTCCACGCTCGACCTCGAGGCGGAAATCTCGCAGGTGCTCGCCGACAATCCGTTGT
TGGAACGCGACGATGAACCGTCGTCGGTCGAGACGCAGGCGGAATCCGAGCGCGAATCGTCGGTGCAGGACGACGAGCCA
GCGCCCGAACGCGAGACCCCGGTGGACGAAATGCCGGGCTCGGGCGGGGTCTACCCCGACGACGATTCCAGCCTGCCCGA
GGCGGCCCGGCCCGATACCCTGCGCGAGCACCTGCTGGGCCAGCTGGTGCTGACGCGCGCGGCGCCGCGCGATGCCGCCC
TGGCGGCGCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGGTCGCCGCTGGAGGAAATCCTGAGCTGGCTGCCC
GCTGAGATGGAGCCGGACCTGGATGAACTGCGCGCGGCGCTGTCGCTGCTGCAGTCGTTCGATCCGGCCGGCATCGGCGC
CCGCGACATGTCCGATTGCCTGTTGTTGCAGCTGCGCAACCCGGACCTGGGGCGCCTGCCCGAGGCCGCCGATCCCAAGG
CGCTGGCCTGCGCCCGCCTCATCTGCGGCCAGCACCTGGCGTTGCTGGCCACCGGCAACAACGCCCGCCTGTGCGCGGCG
GTCGGCTGTGACGAGGCGACCCTGCGCGTCGCCCATGCCCTGATCCTGCGGTTGGAGCCGCGTCCCGGCCGCGCCTGGAC
GGTGCCGGCGGCCGATTACGCCGTGCCCGACGTGATCGTGCGCAGGACGCGCCGCGGCTGGCAGGTGACGCTTAACAGCG
CCGCCGTGCCGCGCCTGCAGATCAACGGCCTGTACGCGCAGATGCTGGGCAACCAGAAGGAATCGGCCCATGCCGGCCTG
CAGGCGCAGTTGCAGCAGGCCAAGTGGATGATTCGCAACGTCGAGCAGCGCTTCGACACCATCCTGCGGGTGTCCCAGGC
CATCGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTCATCCTGAAAGACATCGCGGGCG
AGCTGGGCTTGCACGAATCGACCATTTCACGGGCCACGACACAGAAGTACATGCTCACTCCGTTTGGCACGCTGGAGCTC
AAGCGCTTCTTCGGGGCGGGGGTGTCGACGGACGGCGGCGACGCCACCTCGGCCACGGCGGTGCAGACCTTCATCCGGCA
GATGGTGGCCGAGGAGAACCGGGCCAAGCCGCTGTCGGACAGCCAGATCATGGAAAAGCTGGCCGACCAGGGCATCGTCA
TCGCCCGCCGCACGGTCGCGAAATACCGCGAAGCGCTGCGGATCGCGCCCGCCGCGCTACGCAAGGCGCAGGCCGTGGCG
CGGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4B5X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.911

100

0.514