Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H76_RS06445 Genome accession   NZ_CP065994
Coordinates   1243942..1245303 (+) Length   453 a.a.
NCBI ID   WP_043878333.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1238942..1250303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS06415 (I6H76_06415) - 1239213..1239740 (+) 528 WP_006531017.1 5-formyltetrahydrofolate cyclo-ligase -
  I6H76_RS06420 (I6H76_06420) - 1239737..1240408 (+) 672 WP_006531016.1 rhomboid family intramembrane serine protease -
  I6H76_RS06425 (I6H76_06425) galU 1240469..1241383 (-) 915 WP_039696218.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I6H76_RS06430 (I6H76_06430) - 1241449..1242465 (-) 1017 WP_006531761.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  I6H76_RS06435 (I6H76_06435) - 1242666..1243433 (+) 768 WP_043878332.1 epoxyqueuosine reductase QueH -
  I6H76_RS06440 (I6H76_06440) - 1243460..1243906 (+) 447 WP_006531763.1 dUTP diphosphatase -
  I6H76_RS06445 (I6H76_06445) radA 1243942..1245303 (+) 1362 WP_043878333.1 DNA repair protein RadA Machinery gene
  I6H76_RS06450 (I6H76_06450) - 1245424..1245924 (+) 501 WP_115283788.1 carbonic anhydrase -
  I6H76_RS06455 (I6H76_06455) - 1245952..1246878 (+) 927 WP_006531766.1 aldo/keto reductase family oxidoreductase -
  I6H76_RS06460 (I6H76_06460) - 1246917..1247414 (+) 498 WP_006531767.1 LURP-one-related/scramblase family protein -
  I6H76_RS06465 (I6H76_06465) gltX 1247537..1248994 (+) 1458 WP_006531768.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49505.79 Da        Isoelectric Point: 5.8192

>NTDB_id=516144 I6H76_RS06445 WP_043878333.1 1243942..1245303(+) (radA) [Streptococcus infantarius strain FDAARGOS_1019]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=516144 I6H76_RS06445 WP_043878333.1 1243942..1245303(+) (radA) [Streptococcus infantarius strain FDAARGOS_1019]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAGTATTTAGGGCGTTGCCCAAACTG
TTCATCGTGGACATCATTTGTCGAAGAAGTTGAGGTGCAAGAGGTTAAAAATGCGCGTGTCAGCTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTAAAAGATGTGAGCTCGATTAACTACTCACGCACGAAGACAGACATGGATGAATTTAACCGTGTG
CTTGGTGGCGGTGTGGTGCCAGGCAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACCCTGCTTTTGCA
AGTATCGATTCAGCTTGCTGACAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTCGGCGACATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCCATTCGCACACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACAATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCGACAAATGAAATTGGCATTTTTGAAATGCAATC
TGGCGGGCTTGTCGAGGTGCTCAATCCAAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACTGGCTCAGCTATCG
TGGTTACTATGGAAGGAAGTCGTCCGATTTTAGCGGAAGTCCAAGCTTTGGTAACACCAACGGTCTTTGGAAATGCCAAA
CGTACAACAACAGGTCTTGATTTCAACCGTGTTAGTTTGATTATGGCGGTGCTTGAAAAACGTTGTGGGCTTTTGTTGCA
AAATCAAGATGCTTATCTCAAGTCAGCTGGTGGGGTGAAACTTGATGAACCAGCCATTGACTTAGCAGTTGCGGTAGCGA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGTGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCGGCAAAACTTGGTTTTACCAAAGTTTATGCTCCTAAAAACTCACT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAAAAAGTTTTTGCGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62