Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   I6H76_RS03010 Genome accession   NZ_CP065994
Coordinates   603527..605812 (+) Length   761 a.a.
NCBI ID   WP_006531543.1    Uniprot ID   A0A380KKX3
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 598527..610812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS02970 (I6H76_02970) - 598555..599031 (-) 477 WP_014334426.1 ferrous iron transport protein A -
  I6H76_RS02975 (I6H76_02975) - 599395..600129 (-) 735 WP_006531536.1 amino acid ABC transporter ATP-binding protein -
  I6H76_RS02980 (I6H76_02980) - 600129..600815 (-) 687 WP_006531537.1 amino acid ABC transporter permease -
  I6H76_RS02985 (I6H76_02985) - 601126..601356 (-) 231 WP_006531538.1 DUF1797 family protein -
  I6H76_RS02990 (I6H76_02990) argF 601473..602453 (-) 981 WP_043878310.1 ornithine carbamoyltransferase -
  I6H76_RS02995 (I6H76_02995) - 602628..602825 (+) 198 WP_006531540.1 helix-turn-helix transcriptional regulator -
  I6H76_RS03000 (I6H76_03000) - 602855..603022 (+) 168 WP_006531541.1 DUF3278 domain-containing protein -
  I6H76_RS03005 (I6H76_03005) - 602974..603387 (+) 414 WP_006531542.1 hypothetical protein -
  I6H76_RS03010 (I6H76_03010) clpE 603527..605812 (+) 2286 WP_006531543.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  I6H76_RS03015 (I6H76_03015) - 606010..606456 (+) 447 WP_006531544.1 NUDIX hydrolase -
  I6H76_RS03020 (I6H76_03020) - 606528..606830 (+) 303 WP_006531545.1 DUF1827 family protein -
  I6H76_RS03025 (I6H76_03025) ileS 606918..609716 (-) 2799 WP_006531546.1 isoleucine--tRNA ligase -
  I6H76_RS03030 (I6H76_03030) - 610040..610798 (-) 759 WP_006531547.1 DivIVA domain-containing protein -

Sequence


Protein


Download         Length: 761 a.a.        Molecular weight: 84773.82 Da        Isoelectric Point: 4.9160

>NTDB_id=516113 I6H76_RS03010 WP_006531543.1 603527..605812(+) (clpE) [Streptococcus infantarius strain FDAARGOS_1019]
MLCQNCYLNESTIHLYTNVNGQQKQIDLCQNCYQIMKTDPNNAILGGLGGNPQSSSNQTNQSSNPFDDFFSHLSDFPAFE
SQGFQNTPLTQSGGGNNNGRGGNGNNNFRPNGPAQQEPKGLLEEFGINVTDIARRGDIDPVIGRDAEIVRVIEILNRRTK
NNPVLIGEPGVGKTAVVEGLAQKIVDGNVPQKLQNKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRERKDVILFIDEI
HEIVGAGNAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQKKYEDY
HHVKYSDDAIEAAATLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIEKRLVQAENLKTQATREEDYERAAYFR
DQIAKYKEMQKQTINEDDIPVITEKTIEAIVEEKTNIPVGDLKEKEQSQLIHLADDLKEHVIGQDEAVDKIAKAIRRNRV
GLGTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRN
PYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEASVGFGAAREGRTNSVLGQLGDF
FSPEFMNRFDGIIEFKALSKDNLLHIVNLMLDDVNNRLATNDIHLEVTDRVKEKLVDLGYDPKMGARPLRRTIQDHIEDA
ITDFYLEHPTEKDLKAVMTSNGKIIIKSAKKVEKEETVSVE

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=516113 I6H76_RS03010 WP_006531543.1 603527..605812(+) (clpE) [Streptococcus infantarius strain FDAARGOS_1019]
ATGCTCTGTCAAAATTGTTATTTAAATGAATCTACTATTCACCTGTATACAAATGTCAATGGTCAGCAAAAGCAAATTGA
TTTGTGTCAAAATTGCTATCAAATTATGAAAACTGACCCAAATAACGCTATTTTAGGAGGATTAGGAGGTAATCCTCAAT
CATCTTCTAACCAAACAAACCAATCATCGAATCCTTTCGACGATTTCTTTAGTCATCTCAGCGACTTCCCAGCATTTGAA
AGCCAAGGATTCCAAAATACTCCTCTAACTCAATCTGGTGGAGGCAATAATAACGGACGCGGTGGCAATGGCAACAACAA
TTTCCGCCCAAACGGACCAGCACAGCAAGAACCTAAGGGCTTGCTAGAAGAATTTGGTATCAATGTTACTGATATCGCAC
GTCGTGGTGATATCGACCCTGTCATCGGACGTGATGCTGAAATTGTTCGTGTTATCGAAATTCTTAACCGCCGTACAAAA
AACAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACTGCCGTTGTTGAAGGATTAGCCCAAAAAATTGTAGACGG
TAACGTTCCACAAAAACTCCAAAATAAACAAGTTATCCGCCTAGACGTGGTAAGCCTTGTTCAAGGAACTGGTATTCGTG
GTCAATTTGAAGAACGTATGCAAAAACTCATGGAAGAAATCCGTGAACGTAAAGATGTTATCCTCTTCATCGATGAAATC
CACGAAATTGTCGGCGCTGGTAATGCTGGTGACGGTAACATGGATGCTGGTAACATCTTGAAACCCGCTCTTGCTCGTGG
CGAGCTACAATTAGTTGGTGCAACTACTTTGAACGAATATCGTATCATCGAAAAAGATGCTGCGCTTGAACGTCGTATGC
AACCTGTAAAAGTTGACGAACCAAGCGTCGAAGAAACTATCACTATTCTTCGTGGTATTCAAAAGAAATACGAAGATTAT
CACCATGTCAAATACAGTGATGATGCTATCGAAGCTGCTGCTACCCTCTCAAATCGCTACATTCAAGACCGTTTCCTTCC
AGATAAAGCTATCGACCTTCTCGACGAAGCTGGTTCTAAGATGAACTTGACACTCAACTTTGTTGATCCAAAAGAAATTG
AAAAACGTTTGGTTCAAGCCGAAAACCTAAAAACTCAAGCTACTCGTGAAGAAGATTATGAACGCGCAGCATATTTCCGT
GATCAAATCGCTAAATACAAGGAAATGCAAAAACAAACCATCAACGAAGATGATATTCCAGTGATTACTGAGAAAACTAT
CGAAGCAATCGTTGAAGAAAAAACAAACATCCCTGTTGGTGACTTAAAAGAAAAAGAACAATCACAATTAATTCACCTTG
CTGATGACTTGAAAGAACACGTTATTGGGCAAGATGAAGCCGTTGATAAGATTGCCAAAGCTATCCGTCGTAACCGTGTT
GGTCTTGGTACACCAAACCGTCCAATTGGTTCATTCCTCTTTGTCGGTCCTACTGGTGTTGGTAAAACTGAACTTTCAAA
ACAACTCGCTATTGAACTCTTCGGTTCAGCTGATAGCATGATTCGCTTTGACATGTCTGAATACATGGAAAAACACGCCG
TCGCTAAACTCGTCGGAGCCCCTCCAGGATATGTTGGTTACGAAGAAGCTGGTCAGTTGACTGAAAAAGTTCGTCGAAAT
CCATACTCACTCATCTTGCTTGATGAAGTTGAAAAAGCACACCCTGATGTCATGCACATGTTCTTGCAAGTTCTTGACGA
TGGGCGTTTAACTGACGGTCAAGGACGCACTGTAAGCTTTAAAGATACAATTATCATCATGACATCTAACGCTGGTACTG
GCAAATCTGAAGCTTCTGTTGGTTTCGGTGCTGCTCGTGAAGGACGTACAAATTCTGTTCTTGGTCAACTTGGAGACTTC
TTCAGCCCTGAATTCATGAACCGTTTTGACGGCATTATCGAATTCAAAGCTCTAAGTAAAGATAATCTCCTTCATATCGT
TAACCTCATGCTTGACGATGTTAACAACCGTTTGGCAACTAACGATATTCACCTTGAAGTAACAGATAGAGTTAAAGAAA
AACTAGTTGACCTTGGATATGATCCTAAGATGGGGGCTCGTCCACTTCGTCGAACTATCCAAGATCACATTGAAGATGCT
ATTACAGACTTCTACCTTGAACACCCAACTGAAAAAGATTTGAAAGCTGTGATGACAAGCAATGGTAAAATCATCATCAA
ATCAGCTAAAAAAGTTGAAAAAGAAGAAACTGTTTCAGTAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A380KKX3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

84.881

99.08

0.841

  clpE Streptococcus pneumoniae Rx1

83.001

98.949

0.821

  clpE Streptococcus pneumoniae D39

83.001

98.949

0.821

  clpE Streptococcus pneumoniae R6

83.001

98.949

0.821

  clpE Streptococcus pneumoniae TIGR4

83.001

98.949

0.821

  clpC Lactococcus lactis subsp. cremoris KW2

76.882

99.474

0.765

  clpC Bacillus subtilis subsp. subtilis str. 168

51.256

88.962

0.456

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.402

83.443

0.396

  clpC Streptococcus mutans UA159

47.411

81.209

0.385

  clpC Streptococcus pneumoniae Rx1

46.955

81.997

0.385

  clpC Streptococcus pneumoniae D39

46.955

81.997

0.385

  clpC Streptococcus pneumoniae TIGR4

46.795

81.997

0.384

  clpC Streptococcus thermophilus LMD-9

45.669

83.443

0.381

  clpC Streptococcus thermophilus LMG 18311

45.354

83.443

0.378