Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6H76_RS02710 Genome accession   NZ_CP065994
Coordinates   545820..547622 (-) Length   600 a.a.
NCBI ID   WP_006532274.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 540820..552622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS10285 - 542420..542542 (-) 123 WP_014334468.1 hypothetical protein -
  I6H76_RS02690 (I6H76_02690) - 542746..543804 (-) 1059 WP_006532278.1 peptidyl-prolyl cis-trans isomerase -
  I6H76_RS02695 (I6H76_02695) - 543874..544575 (-) 702 WP_006532277.1 O-methyltransferase -
  I6H76_RS02700 (I6H76_02700) - 544628..545239 (-) 612 WP_014334465.1 HAD-IA family hydrolase -
  I6H76_RS02705 (I6H76_02705) - 545241..545747 (-) 507 WP_006532275.1 GNAT family N-acetyltransferase -
  I6H76_RS02710 (I6H76_02710) pepF 545820..547622 (-) 1803 WP_006532274.1 oligoendopeptidase F Regulator
  I6H76_RS02715 (I6H76_02715) coiA 547622..548584 (-) 963 WP_006532273.1 competence protein CoiA Machinery gene
  I6H76_RS02720 (I6H76_02720) - 548635..549351 (-) 717 WP_006532272.1 pseudouridine synthase -
  I6H76_RS02725 (I6H76_02725) nagB 549384..550088 (-) 705 WP_115283739.1 glucosamine-6-phosphate deaminase -
  I6H76_RS02730 (I6H76_02730) - 550222..550728 (-) 507 WP_006531486.1 VIT1/CCC1 transporter family protein -
  I6H76_RS02735 (I6H76_02735) queA 550892..551920 (+) 1029 WP_006531487.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69093.22 Da        Isoelectric Point: 4.7495

>NTDB_id=516110 I6H76_RS02710 WP_006532274.1 545820..547622(-) (pepF) [Streptococcus infantarius strain FDAARGOS_1019]
MSNNRSDIDEKYKWDLSTVFATDETWEAELAKLDADLEDAKKYKGHLTQSSKNLLTITEHYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMQLSAEDFAAFVAETPALSAYAHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLINRVNAHLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDRYLDYLKAGNSDYPL
NVIAKAGVDMISSDYLDAAFKIFEERLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=516110 I6H76_RS02710 WP_006532274.1 545820..547622(-) (pepF) [Streptococcus infantarius strain FDAARGOS_1019]
ATGTCAAATAATCGTAGTGATATTGATGAAAAATACAAATGGGATTTAAGCACTGTTTTTGCGACAGATGAAACATGGGA
GGCTGAATTAGCTAAGTTAGATGCTGATTTAGAAGATGCTAAAAAATACAAAGGTCACTTGACACAATCAAGTAAGAATT
TGCTAACTATCACGGAGCATTATCTTGATTTGTCACGCCGATTGGAAAAAGTTTACGTCTATGCATCAATGAAAAACGAC
CAAGATACGACAGTGGCAAAGTACCAAGAATACCAAGCCAAAGCTACAGCACTTTATGCTAAATACAGCGAAGTCTTTGC
TTTTTACGAACCGGAATTGATGCAATTATCAGCTGAAGACTTTGCGGCATTTGTTGCTGAAACGCCAGCGTTGTCAGCTT
ATGCGCATTTCTTTGAACAACTTTTCAAACGTCAAGCACACGTCTTGTCACAAAAAGAAGAGGAACTCTTAGCTGGTGCA
CATGAAATCTTTGGTGCCGCTGGTGAAACTTTTGAAATTCTAGATAATGCCGATATTGTTTTCCCAGTGGTTTTAGATGA
TGAAGGTAATGAAGTTCAGTTAACGCATGGTAATTTCATTAGTCTTTTGGAATCAAAAAATCGCGACGTCCGAAAAGCAG
CTTATGAAGCGATGTATGCCACTTACGAACAATTCCAGCATACTTACGCTAAGACTTTGCAGACAAATGTTAAGGTTCAT
AACTACGATGCGCGTGTTCACCACTTCAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTAACCGTGTAAATGCGCATTTGCCATTGCTTCATCGCTATGTTGAGCTTCGTAAGAAAATCCTTAAAT
TAGATGATTTGAAAATGTATGATATCCATACACCATTGTCTGAAATGGATATGAGCTTCACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTGTCTTTGGTAAAGATTATTCTGAGCGTGTTCATCGTGCTTTCACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGTGCTTACGATACTAATGCCTTTATGCTTTTGAACT
GGCAAGACACCCTTGATAATCTGTTTACTTTGGTACACGAAACTGGGCACAGCCTTCATTCAACATTTACACGTGAAAAC
CAACCATATGTGTACGGTGATTACAGTATTTTCTTAGCTGAGATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTCTAAAAGAAGTAGATGATGACAAGGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGTTTCAAAGGAACAATCT
TCCGTCAAGCACAATTCGCAGAGTTTGAAGATATGATTCATAAAGCAGACCAAGCTGGTGAAGTATTGACAAGCGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCAGAAATTCAATACGAATG
GGCACGTATTCCGCACTTCTACTACAATTATTATGTCTATCAATACGCAACAGGTTTTGCTGCAGCAAGCTATTTAGCTG
ATAAAGTGGTTCATGGCACTCAAGCTGATATTGATCGTTATCTTGATTATCTTAAAGCAGGAAATTCTGATTACCCACTA
AACGTCATTGCAAAAGCAGGTGTGGATATGATAAGTAGTGATTATTTGGATGCAGCCTTCAAGATTTTTGAAGAACGTCT
AAATGAATTGGAAGCTTTGGTCGAAAAAGGAGCACACCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.333

100

0.713