Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KYK86_RS17540 Genome accession   NZ_CP079991
Coordinates   3605089..3605571 (+) Length   160 a.a.
NCBI ID   WP_240275544.1    Uniprot ID   -
Organism   Escherichia coli strain KMS2005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3600089..3610571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYK86_RS17515 - 3600705..3600857 (-) 153 Protein_3439 glutaredoxin domain-containing protein -
  KYK86_RS17520 (KYK86_17475) - 3600870..3601879 (-) 1010 Protein_3440 arsenic transporter -
  KYK86_RS17525 (KYK86_17480) yfjW 3602021..3603724 (+) 1704 WP_000896263.1 protein YfjW -
  KYK86_RS17530 (KYK86_17485) - 3604335..3604519 (+) 185 Protein_3442 DUF905 family protein -
  KYK86_RS17535 (KYK86_17490) yfjX 3604622..3605080 (+) 459 WP_000211841.1 antirestriction protein -
  KYK86_RS17540 (KYK86_17495) radC 3605089..3605571 (+) 483 WP_240275544.1 RadC family protein Machinery gene
  KYK86_RS17545 (KYK86_17500) ypjJ 3605580..3605780 (+) 201 WP_001395452.1 DUF987 domain-containing protein -
  KYK86_RS17550 (KYK86_17505) yfjZ 3605818..3606135 (+) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KYK86_RS17555 (KYK86_17510) ypjF 3606156..3606485 (+) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17910.70 Da        Isoelectric Point: 7.5191

>NTDB_id=516102 KYK86_RS17540 WP_240275544.1 3605089..3605571(+) (radC) [Escherichia coli strain KMS2005]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAACDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=516102 KYK86_RS17540 WP_240275544.1 3605089..3605571(+) (radC) [Escherichia coli strain KMS2005]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTTGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375