Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H60_RS09990 Genome accession   NZ_CP065993
Coordinates   2001922..2003289 (-) Length   455 a.a.
NCBI ID   WP_168441512.1    Uniprot ID   -
Organism   Leuconostoc pseudomesenteroides strain FDAARGOS_1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996922..2008289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H60_RS09965 (I6H60_09965) gltX 1997033..1998529 (-) 1497 WP_010276010.1 glutamate--tRNA ligase -
  I6H60_RS09970 (I6H60_09970) - 1998627..1999214 (-) 588 WP_010276014.1 TetR/AcrR family transcriptional regulator -
  I6H60_RS09975 (I6H60_09975) - 1999345..2000583 (+) 1239 WP_010276018.1 ABC transporter permease -
  I6H60_RS09980 (I6H60_09980) - 2000630..2000860 (-) 231 WP_010276022.1 hypothetical protein -
  I6H60_RS09985 (I6H60_09985) - 2000875..2001783 (-) 909 WP_010276025.1 hypothetical protein -
  I6H60_RS09990 (I6H60_09990) radA 2001922..2003289 (-) 1368 WP_168441512.1 DNA repair protein RadA Machinery gene
  I6H60_RS09995 (I6H60_09995) - 2003292..2004152 (-) 861 WP_010276032.1 metallophosphoesterase family protein -
  I6H60_RS10000 (I6H60_10000) - 2004169..2004630 (-) 462 WP_010276035.1 NUDIX domain-containing protein -
  I6H60_RS10005 (I6H60_10005) - 2004630..2005172 (-) 543 WP_010276038.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  I6H60_RS10010 (I6H60_10010) - 2005293..2005574 (+) 282 WP_010276042.1 GNAT family N-acetyltransferase -
  I6H60_RS10015 (I6H60_10015) rpiA 2005571..2006257 (+) 687 WP_010276046.1 ribose-5-phosphate isomerase RpiA -
  I6H60_RS10020 (I6H60_10020) - 2006353..2007783 (+) 1431 WP_010276050.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49124.43 Da        Isoelectric Point: 5.8740

>NTDB_id=516099 I6H60_RS09990 WP_168441512.1 2001922..2003289(-) (radA) [Leuconostoc pseudomesenteroides strain FDAARGOS_1003]
MAKVKTQFICTNCGFVSARYLGRCSNCGEWGTLVEEKIQPETNDRKSRVSLDGRTAKVEKINEVTSEATPRVATQLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLEQAGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAIKKQ
IESLQPDFVVIDSVQTMQEPDITSAIGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSHYKYRILRAVKNRFGATNELGIFEMRDGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAIAIASSYYDKESQSSDVFIGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGITKPRDIQIVGVATLSEALKIALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=516099 I6H60_RS09990 WP_168441512.1 2001922..2003289(-) (radA) [Leuconostoc pseudomesenteroides strain FDAARGOS_1003]
ATCGCTAAAGTTAAAACGCAATTTATATGTACTAATTGTGGGTTTGTATCAGCTCGTTATCTTGGGCGTTGCTCGAATTG
TGGTGAGTGGGGGACATTAGTTGAAGAAAAAATTCAACCAGAAACCAATGATCGCAAGAGCCGTGTCAGCCTTGATGGTC
GAACGGCCAAAGTTGAAAAAATTAACGAAGTAACGTCTGAGGCGACCCCACGGGTGGCAACGCAACTAAAGGAGTTAAAT
CGTGTCCTTGGTGGCGGTGTCGTACCGGGATCAATGGTACTGATTGGTGGCGATCCGGGTATTGGTAAATCAACGTTATT
GCTCCAAGTGTCAGGGCAATTGGAGCAAGCGGGTCGTGTTTTGTATGTAACCGGTGAGGAATCTGCGACCCAAGTTAAGT
TGCGCGCTGATCGTTTGGGCGTTGGGCATGACGAATTTTACCTTTATCCGGAAACGGATATGACGGCTATCAAAAAACAA
ATTGAAAGTTTACAGCCGGATTTTGTGGTGATTGATTCGGTTCAAACAATGCAAGAGCCAGATATCACGTCCGCCATTGG
CTCGGTCTCACAAATTCGTGAGGTGACGGCTGATTTGCTGCAAATCGCCAAAACCAATAATATTTCCATCTTTATCGTCG
GTCATGTGACCAAAGATGGTGCTATTGCGGGACCAAAAATTTTGGAACACATGGTAGATACGGTATTATATTTTGAAGGT
GATAGTCACTACAAATACCGTATTCTACGTGCTGTCAAAAATCGTTTTGGGGCGACTAACGAATTAGGCATTTTTGAAAT
GCGTGATGGTGGGTTAATTGAGGTTGCTAATCCTTCTGAAATTTTCCTTGAGGAGCGCTTGGCTGGTGCAACCGGATCGG
CCATTGTGGTGGCATTAGAAGGATCACGCCCAATTTTGGTTGAGCTGCAGGCCTTGGTCACACCGACTGTATTTGGGAAT
GCGCAACGGACCGCTGCTGGATTAGATCGTAACCGTGTGTCACTTATTATGGCTGTGCTTGAGAAACGTGCTAATTTGCT
ACTGCAAAATCAAGATGCCTATTTGAAGGCGGCTGGGGGCGTCAAACTTGATGAGCCAGCCATTGATTTGGCAATTGCAA
TTGCGATTGCGAGTTCTTACTATGATAAAGAGTCACAATCTAGTGATGTATTTATTGGTGAAATTGGTTTGACTGGTGAA
GTGCGCAGTGTTGCTGATATTGAAGGGCGTTTAAAAGAAGCAAAAAAGCTTGGTTTCAAACGCGCAATTGTACCAAAAAA
CAATTTAAATGGGATTACCAAGCCGCGTGATATTCAAATCGTTGGCGTCGCAACCTTGAGCGAAGCGCTTAAAATTGCGC
TAGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

66.519

99.121

0.659
  radA Streptococcus pneumoniae Rx1

66.519

99.121

0.659
  radA Streptococcus pneumoniae D39

66.519

99.121

0.659
  radA Streptococcus pneumoniae R6

66.519

99.121

0.659
  radA Streptococcus pneumoniae TIGR4

66.519

99.121

0.659
  radA Streptococcus mitis SK321

66.519

99.121

0.659
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

100

0.631