Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6H57_RS09525 Genome accession   NZ_CP065991
Coordinates   2021178..2021846 (+) Length   222 a.a.
NCBI ID   WP_005695053.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2016178..2026846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS09500 (I6H57_09500) - 2017202..2018020 (+) 819 WP_005695047.1 Cof-type HAD-IIB family hydrolase -
  I6H57_RS09505 (I6H57_09505) crcB 2018021..2018416 (+) 396 WP_005695048.1 fluoride efflux transporter CrcB -
  I6H57_RS09510 (I6H57_09510) recX 2018391..2018843 (-) 453 WP_032827499.1 recombination regulator RecX -
  I6H57_RS09515 (I6H57_09515) recA 2018913..2019968 (-) 1056 WP_005695051.1 recombinase RecA Machinery gene
  I6H57_RS09520 (I6H57_09520) - 2020105..2020947 (-) 843 WP_005695052.1 patatin family protein -
  I6H57_RS09525 (I6H57_09525) sxy/tfoX 2021178..2021846 (+) 669 WP_005695053.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25484.96 Da        Isoelectric Point: 10.3912

>NTDB_id=516042 I6H57_RS09525 WP_005695053.1 2021178..2021846(+) (sxy/tfoX) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MKILTIPNDNIIRVCNLLNQLIGDVTSKNLFTGYGLFHKDKDMFAVWINNKVYLRAKGELSVKLKGLGCKAFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLESALSKIGRIRDLPNLSIKYERALKKVGIDNVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKEKGLNKLNEILSANGFRRCKRTLKKVE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=516042 I6H57_RS09525 WP_005695053.1 2021178..2021846(+) (sxy/tfoX) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGAAAATCCTAACAATACCCAATGATAATATTATCAGAGTGTGTAATTTGCTAAATCAACTGATTGGAGATGTAACAAG
CAAAAACCTATTTACTGGATATGGATTATTCCATAAAGATAAGGATATGTTTGCTGTTTGGATTAATAATAAGGTTTACT
TGAGGGCTAAAGGTGAACTTTCTGTAAAATTAAAAGGGCTGGGCTGCAAAGCCTTTGCAACAAATGAACTCAATAAACGC
TTTGTGTTATCTGATTATTATGCTTTAACTGAAAGTATCTTGAAAGATAATGTCTTAATGAGAACTTTGATCATTCTTTC
AATAACTCAAATAAGGAAGGAAAAACTCGAGTCTGCGCTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCTA
TTAAATATGAACGAGCACTAAAGAAAGTCGGTATTGATAATGTGGATATCTTACGACAAATAGGTGCTGAAAATGCAATT
GTTCGTTTGAAAAAAGCGGATATTGGTGCAACTGAAGCTTTTTATTGGCGACTTCGTGGCGCTTTAGAAAATCGTAATTG
TGAGTTTTATACTGAGAAAGAAAAGGAGAAAGGGCTTAATAAACTTAATGAAATACTTTCTGCAAATGGATTTAGGCGCT
GTAAACGGACTTTAAAAAAGGTTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-198)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

58.373

94.144

0.55