Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6H57_RS01435 Genome accession   NZ_CP065991
Coordinates   296826..297503 (-) Length   225 a.a.
NCBI ID   WP_005695507.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 291826..302503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS01405 (I6H57_01405) mreC 292700..293764 (+) 1065 WP_005695499.1 rod shape-determining protein MreC -
  I6H57_RS01410 (I6H57_01410) mreD 293764..294252 (+) 489 WP_005695501.1 rod shape-determining protein MreD -
  I6H57_RS01415 (I6H57_01415) rhlB 294293..295552 (-) 1260 WP_005695503.1 ATP-dependent RNA helicase RhlB -
  I6H57_RS01420 (I6H57_01420) - 295642..295923 (-) 282 WP_032822874.1 GNAT family N-acetyltransferase -
  I6H57_RS01425 (I6H57_01425) yacG 295920..296126 (-) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  I6H57_RS01430 (I6H57_01430) coaE 296116..296739 (-) 624 WP_005695506.1 dephospho-CoA kinase -
  I6H57_RS01435 (I6H57_01435) pilD 296826..297503 (-) 678 WP_005695507.1 A24 family peptidase Machinery gene
  I6H57_RS01440 (I6H57_01440) pilC 297500..298723 (-) 1224 WP_005695508.1 type II secretion system F family protein Machinery gene
  I6H57_RS01445 (I6H57_01445) pilB 298732..300111 (-) 1380 WP_005695509.1 GspE/PulE family protein Machinery gene
  I6H57_RS01450 (I6H57_01450) pilA 300118..300561 (-) 444 WP_005697917.1 prepilin peptidase-dependent pilin Machinery gene
  I6H57_RS01455 (I6H57_01455) ampD 300704..301267 (+) 564 WP_005695512.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I6H57_RS01460 (I6H57_01460) rppH 301752..302345 (+) 594 WP_005695513.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26263.16 Da        Isoelectric Point: 6.3162

>NTDB_id=516018 I6H57_RS01435 WP_005695507.1 296826..297503(-) (pilD) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MMTFAFFLLGGLAGIFAWFYIDRFIPNLQQEIYLNYVELYPENRPIFHSEKALIQSQKCGHIFRYFLGFGLCFAVLDYFL
QDELFTLWLAITLSLIFVISWLDWHYQLISPTPCLFLFFLGLFGAHQEFSILTLSQSLESAVSFFSVFYIIYHLSKWFYK
KEALGRGDYWLALGIGTYLTIEYLPLFLFIACLLGIIVYWISRKPVLPFAPFLCISLIVTSAITL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=516018 I6H57_RS01435 WP_005695507.1 296826..297503(-) (pilD) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGATGACATTCGCCTTTTTCTTATTGGGTGGTTTAGCGGGCATCTTTGCTTGGTTTTATATTGATCGTTTTATTCCTAA
CCTTCAACAAGAAATTTATCTGAACTATGTCGAACTTTATCCCGAAAACAGGCCTATTTTCCATAGCGAAAAAGCATTGA
TTCAATCTCAAAAGTGTGGTCATATTTTTCGTTATTTTTTAGGATTCGGACTCTGTTTTGCTGTACTCGATTATTTTCTT
CAGGATGAATTGTTTACTTTATGGCTCGCGATTACGCTTAGTCTCATCTTTGTTATCAGTTGGCTAGACTGGCATTATCA
ACTGATTTCACCAACACCTTGCCTATTTTTATTTTTCCTGGGGCTATTCGGCGCACATCAAGAATTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCAGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGTCGTGGCGATTATTGGCTCGCTTTGGGAATCGGCACTTATCTCACCATCGAATACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATAATAGTCTATTGGATTTCTCGTAAACCTGTTTTACCTTTTGCGCCCTTTCTTT
GCATATCGTTAATCGTCACCAGTGCAATAACCTTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

54.299

98.222

0.533
  pilD Haemophilus influenzae 86-028NP

53.394

98.222

0.524