NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	I6I03_RS04000	Genome accession	NZ_CP065990
Coordinates	859728..861101 (+)	Length	457 a.a.
NCBI ID	WP_012864444.1	Uniprot ID	-
Organism	Veillonella parvula strain FDAARGOS_1046
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 854728..866101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I03_RS03980 (I6I03_03980)	-	854785..855264 (+)	480	WP_004696020.1	CtsR family transcriptional regulator	-
I6I03_RS03985 (I6I03_03985)	-	855271..855810 (+)	540	WP_012864447.1	UvrB/UvrC motif-containing protein	-
I6I03_RS03990 (I6I03_03990)	-	855820..856881 (+)	1062	WP_012864446.1	protein arginine kinase	-
I6I03_RS03995 (I6I03_03995)	-	857116..859563 (+)	2448	WP_012864445.1	ATP-dependent Clp protease ATP-binding subunit	-
I6I03_RS04000 (I6I03_04000)	radA	859728..861101 (+)	1374	WP_012864444.1	DNA repair protein RadA	Machinery gene
I6I03_RS04005 (I6I03_04005)	-	861117..862268 (+)	1152	WP_004696009.1	PIN/TRAM domain-containing protein	-
I6I03_RS04010 (I6I03_04010)	ispD	862252..863427 (+)	1176	WP_012864443.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6I03_RS04015 (I6I03_04015)	gltX	863430..864899 (+)	1470	WP_012864442.1	glutamate--tRNA ligase	-
I6I03_RS04020 (I6I03_04020)	-	865036..865989 (+)	954	WP_012864441.1	bile acid:sodium symporter family protein	-

Sequence

Protein

Download Length: 457 a.a. Molecular weight: 49954.77 Da Isoelectric Point: 6.9278

                                >NTDB_id=516010 I6I03_RS04000 WP_012864444.1 859728..861101(+) (radA) [Veillonella parvula strain FDAARGOS_1046]

MAKAKSVFFCQNCGAESSKWMGRCPQCGEWNTLVEEIIKETKHSRTPSRGVGNQTAKPTALPDIEISSIARVSTTFGEID

RVLGGGIVPGALMLLGGDPGIGKSTLLLQVSQKVADTVGAVLYASGEESQLQLKLRAERLHINTERLQVIADTDLDHILE

QAEAMTPSLLVIDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGPRMLEHMVDVVLYFE

GERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAERSDEESGSAVMIYLEGVRPILVEVQSLVVTTAFG

MPRRTAIGYDLNRLIVLLAVLEKRCGFTLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTG

NVRSIPRIEQRINEAKKLGFKKFIIPEGNYKQIKDNDSSIKIKGVKSIQEAMQLVFS

Nucleotide

Download Length: 1374 bp

                                >NTDB_id=516010 I6I03_RS04000 WP_012864444.1 859728..861101(+) (radA) [Veillonella parvula strain FDAARGOS_1046]

ATGGCAAAAGCAAAATCAGTATTCTTTTGTCAAAATTGTGGGGCTGAATCCTCTAAATGGATGGGCCGTTGTCCACAATG

TGGAGAATGGAATACATTAGTTGAAGAAATAATTAAAGAAACTAAACATAGTCGAACACCTTCTCGAGGTGTTGGAAATC

AAACGGCGAAGCCTACTGCCTTGCCAGATATCGAAATCTCTTCTATTGCACGCGTATCTACAACCTTTGGTGAAATTGAC

CGTGTATTAGGTGGGGGTATAGTGCCGGGTGCTCTAATGCTTTTAGGTGGTGATCCTGGTATTGGTAAATCTACTCTGTT

ACTACAGGTTTCTCAGAAGGTAGCCGATACAGTAGGAGCAGTTCTTTATGCATCTGGTGAAGAGTCTCAGTTACAACTTA

AACTTCGAGCAGAACGACTGCATATTAATACTGAACGGTTACAAGTTATTGCAGATACTGATCTAGATCATATATTGGAG

CAAGCTGAAGCAATGACTCCTTCCTTACTAGTCATTGACTCTATACAAACTATGTATACTGGAGATATAGATGCTGCGCC

AGGCAGTGTTAGTCAAGTTCGTGAATGCACATCTCGCCTACTTCGCTTCTGTAAAGAACGAAATATACCTACTGTAATCA

TTGGTCATGTAACAAAGGAAGGCAACATTGCAGGGCCTCGTATGTTAGAGCATATGGTAGATGTAGTGCTTTACTTTGAA

GGGGAGCGTTCCTATCAATTCCGTATATTACGGTCTATTAAAAACCGTTTTGGATCTACATCAGAAACAGGCATTTTTGC

CATGGTAGAGGAAGGGTTACAGGAATTGTCCAATCCGTCTGCTTCTCTTTTAGCCGAGCGTTCCGATGAAGAAAGCGGCA

GTGCCGTCATGATTTACCTTGAAGGGGTTCGTCCCATCTTAGTAGAGGTACAAAGCTTGGTAGTTACTACGGCCTTTGGT

ATGCCACGACGCACGGCGATAGGTTACGATCTCAATCGATTAATCGTATTATTGGCTGTTTTAGAAAAACGCTGTGGCTT

TACATTAGGTAATAAAGATGTATATGTAAATGTTATCGGTGGTCTCAAGGTAAATGAACCGGCTTGTGATTTATCTATGG

CGGTTGCTATAGTATCAAACTTAAAAAATCGTATCGTGCCAACAGATATGGTTATCTTAGGTGAAGTAGGCTTAACTGGT

AATGTTCGCAGTATTCCTCGCATTGAACAGCGTATTAATGAAGCTAAGAAATTAGGTTTTAAAAAGTTTATTATTCCTGA

AGGCAACTATAAACAAATCAAGGATAATGATAGTTCTATCAAAATTAAAGGTGTCAAATCTATACAAGAGGCGATGCAAC

TCGTATTTTCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(67-221)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	54.846	99.344	0.545
radA	Streptococcus mitis NCTC 12261	50.873	100	0.51
radA	Streptococcus pneumoniae Rx1	50.873	100	0.51
radA	Streptococcus pneumoniae D39	50.873	100	0.51
radA	Streptococcus pneumoniae R6	50.873	100	0.51
radA	Streptococcus pneumoniae TIGR4	50.873	100	0.51
radA	Streptococcus mitis SK321	50.873	100	0.51

Detailed information NTG0516010