Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KYX49_RS08735 Genome accession   NZ_CP079944
Coordinates   1839744..1840850 (-) Length   368 a.a.
NCBI ID   WP_001187342.1    Uniprot ID   A0ABX6CGL8
Organism   Acinetobacter baumannii strain 04117201 isolate DstkR-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834744..1845850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX49_RS08705 (KYX49_08640) cydB 1835891..1837036 (+) 1146 WP_000575152.1 cytochrome d ubiquinol oxidase subunit II -
  KYX49_RS08710 (KYX49_08645) cydX 1837050..1837151 (+) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  KYX49_RS08715 (KYX49_08650) - 1837152..1837451 (+) 300 WP_085916945.1 cyd operon YbgE family protein -
  KYX49_RS08720 (KYX49_08655) - 1837464..1837988 (-) 525 WP_000593801.1 GNAT family N-acetyltransferase -
  KYX49_RS08725 (KYX49_08660) - 1838061..1838732 (-) 672 WP_000175350.1 DUF2057 domain-containing protein -
  KYX49_RS08730 (KYX49_08665) - 1838958..1839554 (-) 597 WP_000102943.1 nitroreductase family protein -
  KYX49_RS08735 (KYX49_08670) pilA 1839744..1840850 (-) 1107 WP_001187342.1 signal recognition particle-docking protein FtsY Machinery gene
  KYX49_RS08740 (KYX49_08675) - 1840958..1841284 (-) 327 WP_000955083.1 hypothetical protein -
  KYX49_RS08745 (KYX49_08680) - 1841385..1841744 (-) 360 WP_000185571.1 hypothetical protein -
  KYX49_RS08750 (KYX49_08685) - 1841960..1842193 (+) 234 WP_000616034.1 hypothetical protein -
  KYX49_RS08755 (KYX49_08690) - 1842731..1843105 (+) 375 WP_001087274.1 DUF2750 domain-containing protein -
  KYX49_RS08760 (KYX49_08695) - 1843246..1843677 (+) 432 WP_000156920.1 CBS domain-containing protein -
  KYX49_RS08765 (KYX49_08700) - 1843728..1844936 (-) 1209 WP_000129953.1 aspartate aminotransferase family protein -
  KYX49_RS08770 (KYX49_08705) grxD 1845164..1845505 (+) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39919.72 Da        Isoelectric Point: 4.9872

>NTDB_id=516004 KYX49_RS08735 WP_001187342.1 1839744..1840850(-) (pilA) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=516004 KYX49_RS08735 WP_001187342.1 1839744..1840850(-) (pilA) [Acinetobacter baumannii strain 04117201 isolate DstkR-2]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGCCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGGCAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451