Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   I6H44_RS06685 Genome accession   NZ_CP065983
Coordinates   1353368..1354111 (+) Length   247 a.a.
NCBI ID   WP_006718985.1    Uniprot ID   E6KYX8
Organism   Aggregatibacter segnis strain FDAARGOS_987     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348368..1359111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H44_RS06645 (I6H44_06645) tolR 1348850..1349272 (+) 423 WP_006718996.1 colicin uptake protein TolR -
  I6H44_RS06650 (I6H44_06650) tolA 1349290..1350405 (+) 1116 WP_006718994.1 cell envelope integrity protein TolA -
  I6H44_RS06655 (I6H44_06655) tolB 1350439..1351719 (+) 1281 WP_006718992.1 Tol-Pal system beta propeller repeat protein TolB -
  I6H44_RS06660 (I6H44_06660) pal 1351734..1352186 (+) 453 WP_006718991.1 peptidoglycan-associated lipoprotein Pal -
  I6H44_RS06680 (I6H44_06680) comN 1352863..1353381 (+) 519 WP_006718987.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  I6H44_RS06685 (I6H44_06685) comO 1353368..1354111 (+) 744 WP_006718985.1 type II secretion system protein J Machinery gene
  I6H44_RS06690 (I6H44_06690) - 1354108..1354803 (+) 696 WP_006718983.1 DUF2572 family protein -
  I6H44_RS06695 (I6H44_06695) comQ 1354778..1355080 (+) 303 WP_006718982.1 DUF5374 domain-containing protein Machinery gene
  I6H44_RS06700 (I6H44_06700) recC 1355119..1358514 (+) 3396 WP_006718979.1 exodeoxyribonuclease V subunit gamma -
  I6H44_RS06705 (I6H44_06705) rimI 1358517..1358960 (-) 444 WP_006718977.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28557.87 Da        Isoelectric Point: 8.8911

>NTDB_id=515945 I6H44_RS06685 WP_006718985.1 1353368..1354111(+) (comO) [Aggregatibacter segnis strain FDAARGOS_987]
MMKNKFFYDVVYSRGQTLVALMISVALSSFLLLVIMQFYSQHQQQNRGMLLRLQLQTELQRVIQLIGKDLARSGFRAVSD
KLTKNNLALFELGNIPSSVFITQMNSERNNSCVLFFYDLDSNGCIGTGYQEDACILNKRNATKEIERELFGYRLHQKMLE
TRLTYKNTVKQNCNREECQRYTQQSACNHGGWVDLLDDKVYEISHLSFDWLAEKQGVEIRLAGHFKTNKKIKYETSLVVP
LLNGAKE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=515945 I6H44_RS06685 WP_006718985.1 1353368..1354111(+) (comO) [Aggregatibacter segnis strain FDAARGOS_987]
ATGATGAAGAATAAGTTTTTTTATGACGTAGTGTATTCTCGTGGGCAAACGCTTGTTGCACTTATGATTTCAGTGGCGCT
TTCAAGTTTTTTACTGCTTGTTATTATGCAGTTTTATAGCCAGCATCAGCAACAGAACCGTGGAATGTTACTTCGTTTGC
AATTACAAACTGAGTTACAACGTGTAATCCAATTAATAGGCAAAGATTTGGCAAGAAGCGGCTTTCGTGCGGTAAGTGAT
AAATTGACGAAAAATAATTTGGCGTTATTTGAACTGGGAAATATTCCCTCATCGGTTTTTATCACTCAAATGAATAGCGA
GAGAAATAACAGCTGTGTGCTGTTTTTTTATGATTTGGATTCAAATGGGTGTATTGGTACTGGTTATCAAGAGGATGCTT
GTATCTTAAATAAACGTAATGCTACAAAGGAAATTGAACGGGAATTATTTGGTTACCGACTTCATCAAAAAATGTTGGAA
ACACGTTTAACTTACAAAAACACAGTAAAACAAAATTGCAATCGAGAGGAATGTCAACGCTATACCCAGCAGTCCGCTTG
TAATCATGGCGGTTGGGTGGATTTATTAGACGATAAGGTATATGAAATTTCCCATTTGAGCTTTGATTGGTTAGCAGAAA
AACAGGGCGTTGAAATACGTTTAGCAGGGCATTTCAAAACGAATAAAAAGATTAAATATGAAACCTCTCTCGTTGTGCCT
TTATTAAATGGAGCTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6KYX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

54.701

94.737

0.518