Detailed information NTG0051592

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LY180_RS14470
• Genome accession: NC_022364
• Coordinates: 2924657..2925649 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli LY180
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2919657..2930649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY180_RS14445 (LY180_13900)	ygbN	2920312..2921676 (+)	1365	WP_000104439.1	GntP family transporter	-
LY180_RS14450 (LY180_13905)	-	2921715..2921951 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
LY180_RS14455 (LY180_13910)	-	2921962..2923389 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
LY180_RS14460 (LY180_13915)	-	2923389..2923982 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
LY180_RS14465 (LY180_13920)	-	2924129..2924536 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
LY180_RS14470 (LY180_13925)	rpoS	2924657..2925649 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
LY180_RS14475 (LY180_13930)	nlpD	2925712..2926806 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
LY180_RS14480 (LY180_13935)	pcm	2926991..2927617 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
LY180_RS14485 (LY180_13940)	surE	2927611..2928372 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
LY180_RS14490 (LY180_13945)	truD	2928353..2929402 (-)	1050	WP_000568949.1	tRNA pseudouridine(13) synthase TruD	-
LY180_RS14495 (LY180_13950)	ispF	2929399..2929878 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LY180_RS14500 (LY180_13955)	ispD	2929878..2930588 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=51592 LY180_RS14470 WP_000081550.1 2924657..2925649(-) (rpoS) [Escherichia coli LY180]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=51592 LY180_RS14470 WP_000081550.1 2924657..2925649(-) (rpoS) [Escherichia coli LY180]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715