Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H71_RS04635 Genome accession   NZ_CP065980
Coordinates   1012718..1014091 (+) Length   457 a.a.
NCBI ID   WP_103207172.1    Uniprot ID   -
Organism   Staphylococcus felis strain FDAARGOS_1014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1007718..1019091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H71_RS04615 (I6H71_04615) - 1008057..1008518 (+) 462 WP_103207167.1 CtsR family transcriptional regulator -
  I6H71_RS04620 (I6H71_04620) - 1008532..1009059 (+) 528 WP_103207169.1 UvrB/UvrC motif-containing protein -
  I6H71_RS04625 (I6H71_04625) - 1009052..1010056 (+) 1005 WP_103207170.1 protein arginine kinase -
  I6H71_RS04630 (I6H71_04630) - 1010072..1012531 (+) 2460 WP_103207171.1 ATP-dependent Clp protease ATP-binding subunit -
  I6H71_RS04635 (I6H71_04635) radA 1012718..1014091 (+) 1374 WP_103207172.1 DNA repair protein RadA Machinery gene
  I6H71_RS04640 (I6H71_04640) - 1014104..1015171 (+) 1068 WP_103207173.1 PIN/TRAM domain-containing protein -
  I6H71_RS04645 (I6H71_04645) ispD 1015168..1015866 (+) 699 WP_103207174.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I6H71_RS04650 (I6H71_04650) ispF 1015859..1016341 (+) 483 WP_103207175.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I6H71_RS04655 (I6H71_04655) gltX 1016416..1017870 (+) 1455 WP_103207176.1 glutamate--tRNA ligase -
  I6H71_RS04660 (I6H71_04660) cysE 1018326..1018955 (+) 630 WP_174688364.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50330.95 Da        Isoelectric Point: 7.7464

>NTDB_id=515861 I6H71_RS04635 WP_103207172.1 1012718..1014091(+) (radA) [Staphylococcus felis strain FDAARGOS_1014]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNTLEESIMQKSAQPKHGVRAQKANVAKVQKLSDIKQEQSPRILTNSDEFN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSQHKRVLYITGEESLNQTKLRADRLDEDASQLNVFAETDLEIIHET
VKKVEPQLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIVIATASSFQNKAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVILPQTNIGGWTYPEQIEVIGVTSVHEALQKAFKSK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=515861 I6H71_RS04635 WP_103207172.1 1012718..1014091(+) (radA) [Staphylococcus felis strain FDAARGOS_1014]
GTGGCAAAGAAAAAAGTCATATTTGAATGTACAGCGTGTGGGTATCAATCACCTAAGTGGATGGGCAAATGTCCTAATTG
TGGTGCGTGGAATACACTGGAAGAATCTATTATGCAAAAATCAGCACAGCCTAAACATGGTGTAAGGGCACAAAAGGCCA
ATGTAGCCAAAGTGCAAAAACTGAGCGACATTAAACAAGAACAGTCACCCCGAATTCTTACAAATAGTGATGAATTTAAT
CGTGTGCTTGGTGGAGGTATAGTAGAAGGATCACTCGTCTTAATTGGAGGCGATCCAGGTATTGGAAAGTCCACATTATT
GTTACAAATGTGTGCTGCACTTTCTCAGCATAAACGTGTTTTATATATTACCGGTGAAGAATCTTTAAATCAAACGAAAT
TACGTGCAGATCGGCTTGATGAAGATGCAAGTCAACTCAATGTATTTGCCGAAACAGATTTAGAAATCATACATGAAACA
GTGAAAAAAGTAGAGCCGCAACTGATTGTAGTGGACTCGATACAAACCATCTATCATCCAGAAATTAGTTCAGCACCTGG
ATCAGTTTCACAAGTTAGAGAGAGTACACAAAGTTTAATGCATATCGCAAAGCAAATGAATATCGCTACGTTTATTGTGG
GGCATGTTACAAAAGAAGGTCAAATTGCAGGACCACGTTTACTTGAGCATATGGTCGACACAGTTTTGTATTTTGAAGGT
GACGAACATCATGCTTATCGAATATTACGTGCGGTTAAAAACCGCTTTGGCTCGACCAATGAAATGGGTATTTTTGAAAT
GAAGCAAACAGGTTTAAAAAGTGTGCCCAATCCATCTGAAATGTTTTTGGAAGAGCGATCAACTAATGTCCCAGGTTCGA
CGATTGTAGCGACTATGGAAGGGACAAGACCACTTTTGATTGAAGTACAAGCGCTTGTGACTCCGACTACATTTAACAAT
CCAAGACGTATGGCCACGGGCATTGACCATAATCGATTAAGCTTATTAATGGCCGTGCTTGAAAAGAAAGAAGGCTATCT
CTTACAGCAGCAAGATGCTTATATAAAAGTAGCTGGTGGTGTCAAGTTAACTGAGCCTGCTGTTGATTTAGGGATTGTGA
TTGCAACAGCGTCTAGTTTTCAAAATAAAGCCGTTGATGGTTTAGACTGTTTTATAGGAGAGGTCGGTCTAACTGGTGAA
GTACGCCGTGTGTCACGAATAGAACAACGTGTTCAAGAAGCGGCCAAATTAGGATTTAAACGTGTTATTTTACCACAAAC
CAATATTGGCGGTTGGACTTATCCAGAACAAATTGAAGTTATCGGTGTGACATCTGTTCACGAAGCACTTCAAAAAGCCT
TTAAATCAAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.157

100

0.663
  radA Streptococcus pneumoniae Rx1

58.59

99.344

0.582
  radA Streptococcus pneumoniae D39

58.59

99.344

0.582
  radA Streptococcus pneumoniae R6

58.59

99.344

0.582
  radA Streptococcus pneumoniae TIGR4

58.59

99.344

0.582
  radA Streptococcus mitis NCTC 12261

58.59

99.344

0.582
  radA Streptococcus mitis SK321

58.59

99.344

0.582