Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H68_RS01515 Genome accession   NZ_CP065967
Coordinates   312376..313746 (+) Length   456 a.a.
NCBI ID   WP_141822796.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain FDAARGOS_1011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 307376..318746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H68_RS01485 (I6H68_01485) - 307464..308651 (+) 1188 WP_060743858.1 MFS transporter -
  I6H68_RS01490 (I6H68_01490) - 308715..309095 (+) 381 WP_141822800.1 winged helix-turn-helix transcriptional regulator -
  I6H68_RS01495 (I6H68_01495) - 309171..310517 (-) 1347 WP_023440693.1 aminopeptidase C -
  I6H68_RS01500 (I6H68_01500) rpiA 310587..311273 (-) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  I6H68_RS01505 (I6H68_01505) - 311277..311606 (-) 330 WP_060743855.1 GNAT family N-acetyltransferase -
  I6H68_RS01510 (I6H68_01510) - 311743..312276 (+) 534 WP_002833247.1 dUTP diphosphatase -
  I6H68_RS01515 (I6H68_01515) radA 312376..313746 (+) 1371 WP_141822796.1 DNA repair protein RadA Machinery gene
  I6H68_RS01520 (I6H68_01520) - 313764..314894 (+) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  I6H68_RS01525 (I6H68_01525) gltX 314964..316451 (+) 1488 WP_002833250.1 glutamate--tRNA ligase -
  I6H68_RS01530 (I6H68_01530) cysS 316632..318044 (+) 1413 WP_060743853.1 cysteine--tRNA ligase -
  I6H68_RS01535 (I6H68_01535) - 318037..318450 (+) 414 WP_023440688.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50359.86 Da        Isoelectric Point: 7.3750

>NTDB_id=515811 I6H68_RS01515 WP_141822796.1 312376..313746(+) (radA) [Pediococcus pentosaceus strain FDAARGOS_1011]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAKRLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=515811 I6H68_RS01515 WP_141822796.1 312376..313746(+) (radA) [Pediococcus pentosaceus strain FDAARGOS_1011]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGGCGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGTGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGAAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCAAACGTTTACAGGTTAACAGTGAACGTTTTTACTTATACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCTGAATTAATGCAAATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGGGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTTGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTAATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATCGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGAATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
AAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.593

99.781

0.664
  radA Streptococcus mitis NCTC 12261

66.593

99.781

0.664
  radA Streptococcus mitis SK321

66.593

99.781

0.664
  radA Streptococcus pneumoniae TIGR4

66.593

99.781

0.664
  radA Streptococcus pneumoniae D39

66.593

99.781

0.664
  radA Streptococcus pneumoniae R6

66.593

99.781

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651