Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   I6H98_RS11300 Genome accession   NZ_CP065966
Coordinates   2374237..2374794 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FDAARGOS_1041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2369237..2379794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H98_RS11280 (I6H98_11280) pilR 2370513..2371850 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  I6H98_RS11285 (I6H98_11285) thiO 2371896..2372990 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  I6H98_RS11290 (I6H98_11290) - 2373125..2373634 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  I6H98_RS11295 (I6H98_11295) - 2373740..2374246 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  I6H98_RS11300 (I6H98_11300) pilV 2374237..2374794 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  I6H98_RS11305 (I6H98_11305) pilW 2374791..2375615 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  I6H98_RS11310 (I6H98_11310) pilX 2375612..2376199 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  I6H98_RS11315 (I6H98_11315) pilY1 2376211..2379702 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=515785 I6H98_RS11300 WP_003119423.1 2374237..2374794(+) (pilV) [Pseudomonas aeruginosa strain FDAARGOS_1041]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=515785 I6H98_RS11300 WP_003119423.1 2374237..2374794(+) (pilV) [Pseudomonas aeruginosa strain FDAARGOS_1041]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995