Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KZH43_RS10630 Genome accession   NZ_CP079923
Coordinates   1353638..1354360 (-) Length   240 a.a.
NCBI ID   WP_258404906.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Rx1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348638..1359360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH43_RS06710 (KZH43_06710) - 1351212..1352378 (-) 1167 WP_000521362.1 MalY/PatB family protein -
  KZH43_RS06715 (KZH43_06715) - 1352386..1353480 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  KZH43_RS10630 rcrP 1353638..1354360 (-) 723 WP_258404906.1 ABC transporter ATP-binding protein Regulator
  KZH43_RS10635 - 1354385..1355320 (-) 936 Protein_1357 ABC transporter ATP-binding protein -
  KZH43_RS06725 (KZH43_06725) amiA 1355492..1357450 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  KZH43_RS06730 (KZH43_06730) - 1357653..1359275 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27209.07 Da        Isoelectric Point: 5.0452

>NTDB_id=515753 KZH43_RS10630 WP_258404906.1 1353638..1354360(-) (rcrP) [Streptococcus pneumoniae strain Rx1]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=515753 KZH43_RS10630 WP_258404906.1 1353638..1354360(-) (rcrP) [Streptococcus pneumoniae strain Rx1]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTAGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362