Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JCQ35_RS08400 Genome accession   NZ_CP065960
Coordinates   1618747..1619718 (-) Length   323 a.a.
NCBI ID   WP_103362204.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDK8D55P     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613747..1624718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCQ35_RS08375 (JCQ35_08375) - 1613897..1614448 (+) 552 WP_025907016.1 helix-turn-helix domain-containing protein -
  JCQ35_RS08380 (JCQ35_08380) - 1614412..1615275 (+) 864 WP_204175239.1 IS3 family transposase -
  JCQ35_RS08385 (JCQ35_08385) - 1615855..1616892 (-) 1038 WP_198471472.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  JCQ35_RS08390 (JCQ35_08390) - 1616995..1617795 (-) 801 WP_107565269.1 ABC transporter ATP-binding protein -
  JCQ35_RS08395 (JCQ35_08395) - 1617792..1618757 (-) 966 WP_103362205.1 iron chelate uptake ABC transporter family permease subunit -
  JCQ35_RS08400 (JCQ35_08400) ceuB 1618747..1619718 (-) 972 WP_103362204.1 ABC transporter permease Machinery gene
  JCQ35_RS08405 (JCQ35_08405) - 1619845..1620261 (-) 417 WP_103362203.1 FixH family protein -
  JCQ35_RS08410 (JCQ35_08410) nrdF 1620411..1621382 (-) 972 WP_025905415.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  JCQ35_RS08415 (JCQ35_08415) nrdE 1621411..1623516 (-) 2106 WP_025905414.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  JCQ35_RS08420 (JCQ35_08420) nrdI 1623479..1623877 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35491.00 Da        Isoelectric Point: 10.7243

>NTDB_id=515742 JCQ35_RS08400 WP_103362204.1 1618747..1619718(-) (ceuB) [Mammaliicoccus sciuri strain GDK8D55P]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVI
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=515742 JCQ35_RS08400 WP_103362204.1 1618747..1619718(-) (ceuB) [Mammaliicoccus sciuri strain GDK8D55P]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTTACATATATTAAATTTAACTGACGAACAGAAGAACATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATTTCAGGGAGTTCATTAGCTATTTGTGGACTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGCGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATGCTATTTATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCTTTAGTTGGTATCATGCTCGGAAACATTGTGTCGAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
CTATATTAGTATTCCGTTATTGATTTTAGCGTTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTCA
GTGTGAATTTAGGACTTAATTATCAAAAAGTTGTCAATATTGGACTTATCATTGCATCAATTATTACAGCACTTGTTATT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTGAAAAA
TGCATTGCCACATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTCATAGGAAGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATAGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.42

98.142

0.505