Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KZH43_RS01665 Genome accession   NZ_CP079923
Coordinates   330921..331517 (-) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae strain Rx1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 325921..336517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH43_RS01660 (KZH43_01660) pbp1a 328765..330924 (-) 2160 WP_115275734.1 penicillin-binding protein PBP1A -
  KZH43_RS01665 (KZH43_01665) recU 330921..331517 (-) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  KZH43_RS01670 (KZH43_01670) - 331583..332110 (+) 528 WP_000179549.1 DUF1273 domain-containing protein -
  KZH43_RS01675 (KZH43_01675) gpsB 332180..332509 (+) 330 WP_000146522.1 cell division regulator GpsB -
  KZH43_RS01685 (KZH43_01685) - 332995..334152 (+) 1158 WP_000711391.1 class I SAM-dependent RNA methyltransferase -
  KZH43_RS01690 (KZH43_01690) mapZ 334165..335559 (+) 1395 WP_000039255.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=515686 KZH43_RS01665 WP_000248787.1 330921..331517(-) (recU) [Streptococcus pneumoniae strain Rx1]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=515686 KZH43_RS01665 WP_000248787.1 330921..331517(-) (recU) [Streptococcus pneumoniae strain Rx1]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49