Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JBL37_RS19660 Genome accession   NZ_CP065948
Coordinates   4147610..4148167 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAM68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4142610..4153167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL37_RS19640 (JBL37_19645) pilR 4143886..4145223 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  JBL37_RS19645 (JBL37_19650) thiO 4145269..4146363 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  JBL37_RS19650 (JBL37_19655) - 4146498..4147007 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  JBL37_RS19655 (JBL37_19660) - 4147113..4147619 (+) 507 WP_033937816.1 Tfp pilus assembly protein FimT/FimU -
  JBL37_RS19660 (JBL37_19665) pilV 4147610..4148167 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  JBL37_RS19665 (JBL37_19670) pilW 4148164..4148988 (+) 825 WP_009875846.1 type 4a pilus minor pilin PilW -
  JBL37_RS19670 (JBL37_19675) pilX 4148985..4149572 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  JBL37_RS19675 (JBL37_19680) pilY1 4149584..4153075 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=515652 JBL37_RS19660 WP_003119423.1 4147610..4148167(+) (pilV) [Pseudomonas aeruginosa strain PAM68]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=515652 JBL37_RS19660 WP_003119423.1 4147610..4148167(+) (pilV) [Pseudomonas aeruginosa strain PAM68]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995