Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JBL36_RS31045 Genome accession   NZ_CP065947
Coordinates   6610043..6610678 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PAS6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6605043..6615678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL36_RS31015 (JBL36_31010) murB 6606141..6607160 (-) 1020 WP_033938226.1 UDP-N-acetylmuramate dehydrogenase -
  JBL36_RS31020 (JBL36_31015) - 6607157..6607621 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  JBL36_RS31025 (JBL36_31020) kdsB 6607621..6608385 (-) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JBL36_RS31030 (JBL36_31025) - 6608385..6608570 (-) 186 WP_003091157.1 Trm112 family protein -
  JBL36_RS31035 (JBL36_31030) lpxK 6608608..6609606 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  JBL36_RS31040 (JBL36_31035) - 6609606..6610046 (-) 441 WP_017001503.1 biopolymer transporter ExbD -
  JBL36_RS31045 (JBL36_31040) exbB 6610043..6610678 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JBL36_RS31050 (JBL36_31045) comA 6610751..6612976 (-) 2226 WP_058342849.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JBL36_RS31055 (JBL36_31050) - 6613107..6613640 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  JBL36_RS31060 (JBL36_31055) - 6613728..6614972 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=515629 JBL36_RS31045 WP_003091163.1 6610043..6610678(-) (exbB) [Pseudomonas aeruginosa strain PAS6]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=515629 JBL36_RS31045 WP_003091163.1 6610043..6610678(-) (exbB) [Pseudomonas aeruginosa strain PAS6]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACTGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81