Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LY180_RS02765 Genome accession   NC_022364
Coordinates   566234..566839 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli LY180     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 561234..571839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY180_RS27050 - 561788..561886 (+) 99 Protein_530 hypothetical protein -
  LY180_RS02735 (LY180_02670) rsmS 561939..562100 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  LY180_RS02740 (LY180_02675) priC 562114..562641 (-) 528 WP_000844849.1 primosomal replication protein N'' -
  LY180_RS02745 (LY180_02680) ybaN 562711..563088 (+) 378 WP_001188905.1 DUF454 family protein -
  LY180_RS02750 (LY180_02685) apt 563241..563792 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  LY180_RS02755 (LY180_02690) dnaX 563921..565852 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  LY180_RS02760 (LY180_02695) ybaB 565905..566234 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  LY180_RS02765 (LY180_02700) recR 566234..566839 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  LY180_RS02770 (LY180_02705) htpG 566949..568823 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  LY180_RS02775 (LY180_02710) adk 569004..569648 (+) 645 WP_001220233.1 adenylate kinase -
  LY180_RS02780 (LY180_02715) hemH 569884..570846 (+) 963 WP_001250096.1 ferrochelatase -
  LY180_RS02785 (LY180_02720) aes 570843..571802 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=51562 LY180_RS02765 WP_001195025.1 566234..566839(+) (recR) [Escherichia coli LY180]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=51562 LY180_RS02765 WP_001195025.1 566234..566839(+) (recR) [Escherichia coli LY180]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment