Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JBL47_RS19135 Genome accession   NZ_CP065946
Coordinates   4211314..4212696 (+) Length   460 a.a.
NCBI ID   WP_005971086.1    Uniprot ID   A0A1V2R930
Organism   Pectobacterium parmentieri strain WC19161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4206314..4217696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL47_RS19115 (JBL47_19115) - 4207746..4208960 (-) 1215 WP_014698673.1 type II toxin-antitoxin system HipA family toxin -
  JBL47_RS19120 (JBL47_19120) - 4208953..4209264 (-) 312 WP_012822313.1 helix-turn-helix domain-containing protein -
  JBL47_RS19125 (JBL47_19125) - 4209470..4210162 (-) 693 WP_198481840.1 YtjB family periplasmic protein -
  JBL47_RS19130 (JBL47_19130) serB 4210319..4211296 (+) 978 WP_198481841.1 phosphoserine phosphatase -
  JBL47_RS19135 (JBL47_19135) radA 4211314..4212696 (+) 1383 WP_005971086.1 DNA repair protein RadA Machinery gene
  JBL47_RS19140 (JBL47_19140) nadR 4212828..4214081 (+) 1254 WP_012822310.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  JBL47_RS19145 (JBL47_19145) - 4214078..4214719 (-) 642 WP_121295543.1 5-formyltetrahydrofolate cyclo-ligase -
  JBL47_RS19155 (JBL47_19155) zapA 4215018..4215347 (-) 330 WP_005971092.1 cell division protein ZapA -
  JBL47_RS19160 (JBL47_19160) - 4215540..4216127 (+) 588 WP_012822308.1 YecA family protein -
  JBL47_RS19165 (JBL47_19165) pepP 4216189..4217514 (+) 1326 WP_012822307.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49576.13 Da        Isoelectric Point: 7.4218

>NTDB_id=515592 JBL47_RS19135 WP_005971086.1 4211314..4212696(+) (radA) [Pectobacterium parmentieri strain WC19161]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=515592 JBL47_RS19135 WP_005971086.1 4211314..4212696(+) (radA) [Pectobacterium parmentieri strain WC19161]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGTGGGGCTGATTACCCACGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACTGAAGTTCGCCTGGCGTCGGCGTCCGTATCACGCTCCGACCGTCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTGCAAAAGCTCTCGGAAATCAGCCTTGAAGCCCTGCCTCGTTTTTCTACTGGT
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCGATCCTGATTGGCGGCAACCCCGGCGCAGG
TAAAAGTACCCTGCTACTGCAAACGCTCTGCAAGCTGTCAGAAAATATGAAAACCCTGTACGTTACCGGGGAAGAATCCT
TGCAGCAGGTCGCGATGCGGGCACACCGTCTTAATCTGCCGACCCAGAATCTCAACATGCTGTCAGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTCGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCACTCGCTGGTCCGAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGACGGTGATGCCGATTCCCGTTTCCGCACCCTACGTAGCCATAAAAACCGTTTCGGTGCCGTCAATGAATT
GGGCGTGTTCGCCATGACGGAACAAGGGCTGCGTGAGATCAGCAATCCATCGGCCATTTTCCTCAGCCGCGGGGATGAAG
TGACGTCCGGTAGCTCGGTCATGGTGGTGTGGGAAGGTACACGCCCGCTGTTGGTTGAGATTCAGGCACTGGTAGATCAA
TCAATGATGGCTAACCCGCGTCGCGTTGCCGTCGGATTAGAGCAAAACCGCCTGGCGATCCTGCTGGCAGTACTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAACGTCGTCGGCGGCGTCAAAGTGACCGAAACCAGTGCCG
ATCTGGCGCTGCTGCTATCGCTGGTTTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCTGGCGAAATTCGTCCGGTTCCCAGCGGACAAGAGCGGATTACCGAGGCCGCCAAACACGGTTTTAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2R930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426