Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JAV55_RS13320 Genome accession   NZ_CP065943
Coordinates   2590783..2591553 (-) Length   256 a.a.
NCBI ID   WP_063906791.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2585783..2596553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS13300 (JAV55_13300) - 2585858..2586670 (-) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -
  JAV55_RS13305 (JAV55_13305) - 2586696..2587334 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  JAV55_RS13310 (JAV55_13310) glyS 2587532..2589571 (-) 2040 WP_003183618.1 glycine--tRNA ligase subunit beta -
  JAV55_RS13315 (JAV55_13315) glyQ 2589564..2590451 (-) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  JAV55_RS13320 (JAV55_13320) recO 2590783..2591553 (-) 771 WP_063906791.1 DNA repair protein RecO Machinery gene
  JAV55_RS13325 (JAV55_13325) - 2591591..2591734 (-) 144 WP_003183626.1 YqzL family protein -
  JAV55_RS13330 (JAV55_13330) era 2591896..2592801 (-) 906 WP_009327871.1 GTPase Era -
  JAV55_RS13335 (JAV55_13335) - 2592782..2593192 (-) 411 WP_003183631.1 cytidine deaminase -
  JAV55_RS13340 (JAV55_13340) - 2593324..2593704 (-) 381 WP_003183633.1 diacylglycerol kinase family protein -
  JAV55_RS13345 (JAV55_13345) ybeY 2593682..2594158 (-) 477 WP_003183635.1 rRNA maturation RNase YbeY -
  JAV55_RS13350 (JAV55_13350) - 2594155..2596209 (-) 2055 WP_228767688.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29497.10 Da        Isoelectric Point: 8.5665

>NTDB_id=515546 JAV55_RS13320 WP_063906791.1 2590783..2591553(-) (recO) [Bacillus licheniformis strain H2]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMHGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=515546 JAV55_RS13320 WP_063906791.1 2590783..2591553(-) (recO) [Bacillus licheniformis strain H2]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCATGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

78.125

100

0.781