Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JAV55_RS12920 Genome accession   NZ_CP065943
Coordinates   2525175..2525510 (+) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain H2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2520175..2530510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS12900 (JAV55_12900) gcvT 2520607..2521701 (-) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -
  JAV55_RS12905 (JAV55_12905) - 2522294..2523973 (+) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  JAV55_RS12910 (JAV55_12910) - 2523980..2524774 (+) 795 WP_003183441.1 YqhG family protein -
  JAV55_RS12915 (JAV55_12915) sinI 2524965..2525141 (+) 177 WP_003183444.1 anti-repressor SinI Regulator
  JAV55_RS12920 (JAV55_12920) sinR 2525175..2525510 (+) 336 WP_025804940.1 transcriptional regulator SinR Regulator
  JAV55_RS12925 (JAV55_12925) tasA 2525615..2526409 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  JAV55_RS12930 (JAV55_12930) sipW 2526483..2527067 (-) 585 WP_003183449.1 signal peptidase I SipW -
  JAV55_RS12935 (JAV55_12935) tapA 2527064..2527792 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  JAV55_RS12940 (JAV55_12940) - 2528069..2528389 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  JAV55_RS12945 (JAV55_12945) - 2528413..2528595 (-) 183 WP_003183456.1 YqzE family protein -
  JAV55_RS12950 (JAV55_12950) comGG 2528684..2529049 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  JAV55_RS12955 (JAV55_12955) comGF 2529062..2529550 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  JAV55_RS12960 (JAV55_12960) comGE 2529459..2529806 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  JAV55_RS12965 (JAV55_12965) comGD 2529790..2530227 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=515542 JAV55_RS12920 WP_025804940.1 2525175..2525510(+) (sinR) [Bacillus licheniformis strain H2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=515542 JAV55_RS12920 WP_025804940.1 2525175..2525510(+) (sinR) [Bacillus licheniformis strain H2]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928