Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JAV55_RS08120 Genome accession   NZ_CP065943
Coordinates   1597602..1597889 (+) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain H2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1592602..1602889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS08100 (JAV55_08100) - 1594248..1594622 (+) 375 WP_003181373.1 DUF4440 domain-containing protein -
  JAV55_RS08105 (JAV55_08105) - 1594760..1595992 (-) 1233 WP_003181374.1 aminopeptidase -
  JAV55_RS08110 (JAV55_08110) - 1596083..1596214 (-) 132 WP_003181378.1 protein YkpC -
  JAV55_RS08115 (JAV55_08115) mreBH 1596288..1597295 (-) 1008 WP_003181381.1 rod-share determining protein MreBH -
  JAV55_RS08120 (JAV55_08120) abrB 1597602..1597889 (+) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JAV55_RS08125 (JAV55_08125) - 1598057..1599394 (+) 1338 WP_003181386.1 ATP-binding protein -
  JAV55_RS08130 (JAV55_08130) - 1599459..1600121 (+) 663 WP_003181388.1 TrkA family potassium uptake protein -
  JAV55_RS08135 (JAV55_08135) ade 1600249..1601970 (+) 1722 WP_003181389.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=515531 JAV55_RS08120 WP_003181383.1 1597602..1597889(+) (abrB) [Bacillus licheniformis strain H2]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=515531 JAV55_RS08120 WP_003181383.1 1597602..1597889(+) (abrB) [Bacillus licheniformis strain H2]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537