Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   JAV55_RS07990 Genome accession   NZ_CP065943
Coordinates   1572758..1573348 (+) Length   196 a.a.
NCBI ID   WP_003181328.1    Uniprot ID   A0A1Y0YEF8
Organism   Bacillus licheniformis strain H2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567758..1578348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS07960 (JAV55_07960) - 1568064..1568516 (+) 453 WP_011197942.1 flavodoxin -
  JAV55_RS07965 (JAV55_07965) dapD 1568622..1569332 (+) 711 WP_003181319.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  JAV55_RS07970 (JAV55_07970) - 1569401..1570525 (+) 1125 WP_003181321.1 N-acetyldiaminopimelate deacetylase -
  JAV55_RS07975 (JAV55_07975) - 1570588..1570833 (+) 246 WP_003181323.1 YkuS family protein -
  JAV55_RS07980 (JAV55_07980) ahpA 1571128..1571670 (+) 543 WP_003181325.1 biofilm-specific peroxidase AhpA -
  JAV55_RS07985 (JAV55_07985) - 1571752..1572210 (+) 459 WP_003181327.1 redoxin domain-containing protein -
  JAV55_RS07990 (JAV55_07990) rok 1572758..1573348 (+) 591 WP_003181328.1 transcriptional regulator Rok Regulator
  JAV55_RS07995 (JAV55_07995) - 1573494..1574450 (-) 957 WP_009328583.1 hypothetical protein -
  JAV55_RS08000 (JAV55_08000) - 1574603..1575190 (+) 588 WP_003181331.1 molybdenum cofactor guanylyltransferase -
  JAV55_RS08005 (JAV55_08005) - 1575296..1576309 (+) 1014 WP_011197943.1 molybdopterin-synthase adenylyltransferase MoeB -
  JAV55_RS08010 (JAV55_08010) glp 1576329..1577621 (+) 1293 WP_003181335.1 gephyrin-like molybdotransferase Glp -
  JAV55_RS08015 (JAV55_08015) mobB 1577588..1578115 (+) 528 WP_003181336.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22665.62 Da        Isoelectric Point: 9.9960

>NTDB_id=515530 JAV55_RS07990 WP_003181328.1 1572758..1573348(+) (rok) [Bacillus licheniformis strain H2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=515530 JAV55_RS07990 WP_003181328.1 1572758..1573348(+) (rok) [Bacillus licheniformis strain H2]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGAGGCTGAAGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAACATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACTGAATCTCTCCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAACAGCAG
CAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGA
TGGAACGACAAGACGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAATTGCGTGAAGCGGCGATTAAAACAT
TAAAACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAAT
ATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGAGATTTCTACTGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.77

97.449

0.816